BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1410.1
(372 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 131 1e-33
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 96 4e-22
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 78 1e-15
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 79 1e-15
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 72 5e-14
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 131 bits (330), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 178/389 (45%), Gaps = 44/389 (11%)
Query: 6 LLTVDQLINNN--QWNGILIHQLFDSEVGKAICSINLRHDRD-DTMKWSLTKSGNFTIKS 62
+L V LI+ + +W +I LF K I + R D+ W T SG++T+KS
Sbjct: 168 ILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKS 227
Query: 63 MYFHL------RTKNMDYHHPEWN----YIWEIQTIPRIKLFLWKCCTNSLPVRGQIG-Q 111
Y+ L R+ + P N IW+ QT P+I+ FLWKC +NSLPV G + +
Sbjct: 228 GYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYR 287
Query: 112 YIGNVFNCGFCDKV-ESLSHIMLHCTFTHTIWFFFNVRVESIDNLQD-------WILKWK 163
++ C C E+++H++ CTF W ++ + D W+
Sbjct: 288 HLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLG 347
Query: 164 SLEPELQS---LYANVLWFIWKARCEQCFSSKEQTPVQVSNNIKGSGFALK--------K 212
+ P+ + L +LW +WK R E F +E +V + +
Sbjct: 348 NGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCG 407
Query: 213 TKPATNRKDSPVWQPPESPYLKCNVDASFKTLTEVAGYGGIIHNDKADFLFAFAGVI-RG 271
TKP NR W+PP ++KCN DA++ E G G ++ N+K + + A + +
Sbjct: 408 TKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKL 467
Query: 272 QSAEECEGLGILKILQWA----HQLQITHLILESDNLNIIRYLNNCSSAIEWQTEKLMDN 327
+S E E L+ ++WA + Q ++I ESD+ +I LNN I + + +
Sbjct: 468 KSVLEAE----LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNN--DEIWPSLKPTIQD 521
Query: 328 ICEISGYFVSIRFVHIPRDLNNWADKLAK 356
+ + F ++FV IPR+ N A+++A+
Sbjct: 522 LQRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 95.9 bits (237), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 134/290 (46%), Gaps = 27/290 (9%)
Query: 88 IPRIKLFLWKCCTNSLPVRGQ-IGQYIGNVFNCGFCDKVESLSHIMLHCTFTHTIWFFFN 146
+P+IKLFLWK +LPV Q + ++I + ++C C E+ +H++ HC F +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 147 VRVESID---------NLQDWILKWKSLEPELQSLYANVLWFIWKARCEQCFSSKEQTPV 197
+++ I NL + + +L+ + W IWKAR + F + + +
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSVI 120
Query: 198 QVSNNI-------KGSGFALKKTKPATNRKDSPVWQPPESPYLKCNVDASFKTLTEVAGY 250
+ + + AL K + AT R +S + C VDA+++ + +AG
Sbjct: 121 ETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHD---FLCYVDAAWQQQSSLAGS 177
Query: 251 GGII----HNDKADFLFAFAGVIRGQSAEECEGLGILKILQWAHQLQITHLILESDNLNI 306
G + H++K F+ AG R S E I + A QL+ + L++ SD+ +I
Sbjct: 178 GWVFQATSHSEKEITTFS-AGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSI 236
Query: 307 IRYLNNCSSAIEWQTEKLMDNICEISGYFVSIRFVHIPRDLNNWADKLAK 356
+ LN+ S E L+ I I F SI F IPR +N+ AD AK
Sbjct: 237 VDALNSNVSLNE--IFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 111/262 (42%), Gaps = 35/262 (13%)
Query: 82 IWEIQTIPRIKLFLWKCCTNSLPVRGQIGQYIGNVFNCGFCDKV----ESLSHIMLHCTF 137
IW++ P+IK FLW+C T +L ++ N+ C + E++ HIM +C +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSR--NIDADPICQRCCIEEETIHHIMFNCPY 94
Query: 138 THTIWFFFNVRVESI--------DNLQDWILKWKSLEPELQSLYAN--VLWFIWKARCEQ 187
T ++W N+ + + DNL I K+ + ++W +WK+R
Sbjct: 95 TQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVF 154
Query: 188 CFSSKEQTP--------------VQVSNNIKGSGFALKKTKPATNRKDSPVWQPPESPYL 233
F K Q+P + + + + + T+R+DS W PP ++
Sbjct: 155 LFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWV 214
Query: 234 KCNVDASFKTLTEVAGYGGIIHNDKADFLFAFAGVIRGQSAE-ECEGLGILKILQ--WAH 290
KCN D+ + + G I + ++ + E LG L LQ WAH
Sbjct: 215 KCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAH 274
Query: 291 QLQITHLILESDNLNIIRYLNN 312
L+ ++ ESD+ +++ +NN
Sbjct: 275 GLR--YVWFESDSKSLVTLINN 294
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 151/376 (40%), Gaps = 40/376 (10%)
Query: 18 WNGILIHQLFDSEVGKAICSINL-RHDRDDTMKWSLTKSGNFTIKSMYF---HLRTKNMD 73
W+ I Q D I I L + + D + W+ +G +T++S Y+ H + N+
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 74 YHHPEW------NYIWEIQTIPRIKLFLWKCCTNSLPVRGQI---GQYIGNVFNCGFCDK 124
+P IW + +P++K FLW+ + +L ++ G I +C C +
Sbjct: 148 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDP--SCPRCHR 205
Query: 125 V-ESLSHIMLHCTFTHTIWFFFNVRV-----------ESIDNLQDWILKWKSLEPELQSL 172
ES++H + C F W + + E+I N+ +++ ++ + L
Sbjct: 206 ENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQD-TTMSDFHKLL 264
Query: 173 YANVLWFIWKARCEQCFSSKEQTPVQVSNNIKGSGFALKKTKPATNRKDSPV-------- 224
++W IWKAR F+ ++P + + K + + SP
Sbjct: 265 PVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKI 324
Query: 225 -WQPPESPYLKCNVDASFKTLTEVAGYGGIIHNDKADFL-FAFAGVIRGQSAEECEGLGI 282
W+ P + Y+KCN DA F A G II N + + + + E E +
Sbjct: 325 EWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKAL 384
Query: 283 LKILQWAHQLQITHLILESDNLNIIRYLNNCSSAIEWQTEKLMDNICEISGYFVSIRFVH 342
L LQ T + +E D +I +N S +++I + F SI+F
Sbjct: 385 LAALQQTWIRGYTQVFMEGDCQTLINLINGIS--FHSSLANHLEDISFWANKFASIQFGF 442
Query: 343 IPRDLNNWADKLAKWG 358
I R N A LAK+G
Sbjct: 443 IRRKGNKLAHVLAKYG 458
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 116/264 (43%), Gaps = 32/264 (12%)
Query: 118 NCGFC-DKVESLSHIMLHCTFTHTIWFFFNVRV----ESIDNLQD---WILKWKSLEPEL 169
+C C D E+++H++ C F +W + E D+L W+L + P+L
Sbjct: 11 SCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKL 70
Query: 170 Q---SLYANVLWFIWKARCEQCFSSKEQTPVQVSNNI--------KGSGFALKKTKPATN 218
+L +LW +WK+R E F KE +V K + P
Sbjct: 71 GKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVE 130
Query: 219 RKDSPVWQPPESPYLKCNVDASFKTLTEVAGYGGIIHNDKADFLFAFAGVI-RGQSAEEC 277
R S W+ P ++KCN DA+++ G G I+ N+ L+ A + R ++ E
Sbjct: 131 RNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEA 190
Query: 278 EGLGILKILQWA----HQLQITHLILESDNLNIIRYLNNCSSAIEWQT-EKLMDNICEIS 332
E L+ L+WA + +I ESD ++ LN S W T + +++I ++
Sbjct: 191 E----LEALRWAVLTMSRFNYKRIIFESDAQALVNLLN---SDDFWPTLQPALEDIQQLL 243
Query: 333 GYFVSIRFVHIPRDLNNWADKLAK 356
+F ++F PR N AD++A+
Sbjct: 244 HHFEEVKFEFTPRGGNKVADRIAR 267