BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1420.1
(514 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 92 6e-20
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 93 1e-19
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 92 2e-19
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 92 2e-19
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 70 1e-12
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 92.0 bits (227), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%)
Query: 122 LANRLKMVLPEIISPFQAAFIPGRQITDNIIISQEVVHSFKRKKGKNSYFGLKLDMSKAF 181
+ RLK ++ +I P QA+FIPGR TDNI+ QE VHS +RKKG + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 182 DRVEWSFLERIMFQMGFAEQWI 203
DR+ W +LE + GF E W+
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWL 82
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 9/240 (3%)
Query: 276 LTHLLFADDCLIFGLNSLDNINILQNILDTFSAASGQMINYAKSTIFFSKNTHPKFKRLI 335
+THL FADD L+F +I + I F+ SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 336 TRNLKVHQASSLDKYLGTHLFIEANKKQVFSSLLNQIQHKLSKWHTNLLSQAGRSVVIST 395
+ + +YLG L + + L+ +I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 396 IAAAVLRYQMQYFAIPKGISNRIETIQRSFWWGKSKTIHT----INGQQICKPRRFGGLG 451
+ ++ + M F +P I++I SF W + ++T + +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPE-LNTKKAKVAWSDVCTPKDEGGLG 185
Query: 452 IRLPSLDNEAFLSKLLWRALKNPDSLWTKILKAKYYPKDTKPSMAKSN--HSWFWKSMMQ 509
IR N+ L KL+WR L + SLW + L+ K + S++ + SW WK +++
Sbjct: 186 IRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILK 244
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 15/243 (6%)
Query: 276 LTHLLFADDCLIFGLNSLDNINILQNILDTFSAASGQMINYAKSTIFFSKNTHPKFKRLI 335
+THL FADD L+F +I + I F+ SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 336 TRNLKVHQASSLDKYLGTHLFIEANKKQVFSSLLNQIQHKLSKWHTNLLSQAGRSVVIST 395
+ + +YLG L + + L+ +I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 396 IAAAVLRYQMQYFAIPKGISNRIETIQRSFWWG-------KSKTIHTINGQQICKPRRFG 448
+ ++ + M F +P I++I SF W K+K + +C P+ G
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK----VAWSDVCTPKDEG 182
Query: 449 GLGIRLPSLDNEAFLSKLLWRALKNPDSLWTKILKAKYYPKDTKPSMAKSN--HSWFWKS 506
GLGIR N+ L KL+WR L + SLW + L+ K + S++ + SW WK
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 507 MMQ 509
+++
Sbjct: 242 ILK 244
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 15/243 (6%)
Query: 276 LTHLLFADDCLIFGLNSLDNINILQNILDTFSAASGQMINYAKSTIFFSKNTHPKFKRLI 335
+THL FADD L+F +I + I F+ SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 336 TRNLKVHQASSLDKYLGTHLFIEANKKQVFSSLLNQIQHKLSKWHTNLLSQAGRSVVIST 395
+ + +YLG L + + L+ +I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 396 IAAAVLRYQMQYFAIPKGISNRIETIQRSFWWG-------KSKTIHTINGQQICKPRRFG 448
+ ++ + M F +P I++I SF W K+K + +C P+ G
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK----VAWSDVCTPKDEG 182
Query: 449 GLGIRLPSLDNEAFLSKLLWRALKNPDSLWTKILKAKYYPKDTKPSMAKSN--HSWFWKS 506
GLGIR N+ L KL+WR L + SLW + L+ K + S++ + SW WK
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 507 MMQ 509
+++
Sbjct: 242 ILK 244
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 11 NLFPQQITSTHNNNLIKPPLEDEIRSAVFSLKADAAPGPDGYPPFFYHSNWDTVKLDVIS 70
++ P + T + L P + EI +AVF++ + APGPD + F+ +W VK I+
Sbjct: 513 DIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIA 572
Query: 71 MVNKFFSQNYLPPASNHTHICLIPKTKTPQTTSDFRPISLLNTTYKMIT 119
V +FF +L N T I LIPK S FRP+S YK+IT
Sbjct: 573 AVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621