BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000117.1_g1490.1
         (253 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23780.2 | nuclear RNA polymerase D2A | Chr3:8567971-8573819 ...    67   2e-12
AT3G23780.1 | nuclear RNA polymerase D2A | Chr3:8567971-8573819 ...    67   2e-12
AT3G18090.1 | nuclear RNA polymerase D2B | Chr3:6195323-6200204 ...    66   5e-12

>AT3G23780.2 | nuclear RNA polymerase D2A | Chr3:8567971-8573819
            REVERSE LENGTH=1172 | 201606
          Length = 1172

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 1    MIESLIFMGPT-YQSLIRMPEDKVKFRNTRPVHPWTRQPVVEVRSEVHIAGFGSCKR 56
            M+ S+IFMGPT YQ L+ M EDKVKFRNT PVHP TRQPV + R       FG  +R
Sbjct: 1025 MMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVAD-RKRFGGIKFGEMER 1080


>AT3G23780.1 | nuclear RNA polymerase D2A | Chr3:8567971-8573819
            REVERSE LENGTH=1172 | 201606
          Length = 1172

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 1    MIESLIFMGPT-YQSLIRMPEDKVKFRNTRPVHPWTRQPVVEVRSEVHIAGFGSCKR 56
            M+ S+IFMGPT YQ L+ M EDKVKFRNT PVHP TRQPV + R       FG  +R
Sbjct: 1025 MMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVAD-RKRFGGIKFGEMER 1080


>AT3G18090.1 | nuclear RNA polymerase D2B | Chr3:6195323-6200204
           FORWARD LENGTH=1055 | 201606
          Length = 1055

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 34/42 (80%), Gaps = 1/42 (2%)

Query: 1   MIESLIFMGPT-YQSLIRMPEDKVKFRNTRPVHPWTRQPVVE 41
           M+ SLIFMGPT YQ L+ M E+KVKFRNT PVHP TRQPV +
Sbjct: 908 MMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVAD 949

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