BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1500.1
(76 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38760.1 | Late embryogenesis abundant protein (LEA) family p... 56 4e-12
AT5G53820.1 | Late embryogenesis abundant protein (LEA) family p... 49 2e-09
AT1G52680.1 | late embryogenesis abundant protein-related / LEA ... 39 3e-05
>AT5G38760.1 | Late embryogenesis abundant protein (LEA) family
protein | Chr5:15524249-15524743 FORWARD LENGTH=67 |
201606
Length = 67
Score = 55.8 bits (133), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 9/74 (12%)
Query: 1 MDKLSYNVGHAMGQAEVKKDQLVDKASGATQSPSLMDKASGALQSAKETGQQAGEQVKEK 60
M S N+ GQA K Q +KAS ++MDKAS A QSAKE+ ++ G+Q+KEK
Sbjct: 1 MSSNSQNISFQAGQA---KGQTQEKAS------TMMDKASNAAQSAKESLKETGQQIKEK 51
Query: 61 TLGAVDAIKNATGM 74
GA +++KNATGM
Sbjct: 52 AQGATESVKNATGM 65
>AT5G53820.1 | Late embryogenesis abundant protein (LEA) family
protein | Chr5:21853475-21853866 FORWARD LENGTH=67 |
201606
Length = 67
Score = 48.9 bits (115), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 13/71 (18%)
Query: 4 LSYNVGHAMGQAEVKKDQLVDKASGATQSPSLMDKASGALQSAKETGQQAGEQVKEKTLG 63
+S+N G A GQ + +KAS +L+DKAS A QSAKE+ Q+ G+Q+K+K G
Sbjct: 8 MSFNAGQAKGQTQ-------EKAS------NLIDKASNAAQSAKESIQEGGQQLKQKAQG 54
Query: 64 AVDAIKNATGM 74
A + IK TG+
Sbjct: 55 ASETIKEKTGI 65
>AT1G52680.1 | late embryogenesis abundant protein-related / LEA
protein-like protein | Chr1:19618419-19618961 REVERSE
LENGTH=114 | 201606
Length = 114
Score = 39.3 bits (90), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 27/92 (29%)
Query: 3 KLSYNVGHAMGQAEVKKDQLVDKASGA----------TQS----------PSLMDKASGA 42
+LS++ G GQ ++KK++ ++ S A +QS PSL+ +AS
Sbjct: 6 QLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLISQASSV 65
Query: 43 LQSAKETGQQAGEQVKEKTLGAVDAIKNATGM 74
+Q Q G QVK GA DA+KN GM
Sbjct: 66 IQ-------QTGGQVKNMAQGAADAVKNTLGM 90