BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0110.1
(238 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G35530.1 | Ribosomal protein S3 family protein | Chr5:1371035... 424 e-152
AT2G31610.1 | Ribosomal protein S3 family protein | Chr2:1345038... 416 e-149
AT3G53870.1 | Ribosomal protein S3 family protein | Chr3:1995154... 411 e-147
>AT5G35530.1 | Ribosomal protein S3 family protein |
Chr5:13710355-13712192 REVERSE LENGTH=248 | 201606
Length = 248
Score = 424 bits (1090), Expect = e-152, Method: Compositional matrix adjust.
Identities = 204/227 (89%), Positives = 216/227 (95%)
Query: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 180
GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP EYID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180
Query: 181 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHHPKDEEEYIRPTPVAT 227
VLG+KVKIMLDWDPKGKQGPMTPLPD+V IH PK+++ YI P V T
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVT 227
>AT2G31610.1 | Ribosomal protein S3 family protein |
Chr2:13450384-13451669 FORWARD LENGTH=250 | 201606
Length = 250
Score = 416 bits (1068), Expect = e-149, Method: Compositional matrix adjust.
Identities = 202/229 (88%), Positives = 211/229 (92%)
Query: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 180
GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP EYID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180
Query: 181 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHHPKDEEEYIRPTPVATDI 229
VLGIKVKIMLDWDP GK GP TPLPD+V IH PKD+ Y P A +
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAAPV 229
>AT3G53870.1 | Ribosomal protein S3 family protein |
Chr3:19951547-19952782 FORWARD LENGTH=249 | 201606
Length = 249
Score = 411 bits (1057), Expect = e-147, Method: Compositional matrix adjust.
Identities = 199/217 (91%), Positives = 207/217 (95%)
Query: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 180
GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP EYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180
Query: 181 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHHPKDEE 217
VLGIKVK+MLDWDPKG GP TPLPD+V IH PK+EE
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEE 217