BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0130.1
(251 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G02110.1 | CYCLIN D7%3B1 | Chr5:417087-418553 FORWARD LENGTH=... 89 1e-20
AT1G70210.1 | CYCLIN D1%3B1 | Chr1:26440015-26441980 FORWARD LEN... 80 5e-17
AT5G67260.1 | CYCLIN D3%3B2 | Chr5:26836313-26837665 FORWARD LEN... 74 4e-15
AT5G67260.2 | CYCLIN D3%3B2 | Chr5:26836313-26839548 FORWARD LEN... 74 6e-15
AT5G65420.4 | CYCLIN D4%3B1 | Chr5:26142300-26143750 REVERSE LEN... 72 9e-15
>AT5G02110.1 | CYCLIN D7%3B1 | Chr5:417087-418553 FORWARD LENGTH=341
| 201606
Length = 341
Score = 89.4 bits (220), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 83 RVRAILWFLKSQRRLNLSIDTVFRASSYFHRFVSINNYNMKWEAAFMELLAVVCLYIAAK 142
R A W ++++ RLNLS +TVF A++ F RFV + + +W +EL+AV L IA+K
Sbjct: 78 RFHAFQWLIQTRSRLNLSYETVFSAANCFDRFVYMTCCD-EWTNWMVELVAVTSLSIASK 136
Query: 143 FGEVSIPTLHELQMEDLNNSFEVSRIQEMELTVLKALEWRVGCVTSYSYLELLIHQL 199
F EV+ P L EL+ME L + F V+ + +MEL +LKALEWRV VTSY++ + L+ ++
Sbjct: 137 FNEVTTPLLEELEMEGLTHMFHVNTVAQMELIILKALEWRVNAVTSYTFSQTLVSKI 193
>AT1G70210.1 | CYCLIN D1%3B1 | Chr1:26440015-26441980 FORWARD
LENGTH=339 | 201606
Length = 339
Score = 79.7 bits (195), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 39 GSSSFYNTTSKEDS--KNSFMVFLQKELQLMPININHLHSPFFQ------ASRVRAILWF 90
G S+ ++S+ DS +S F++ E +P H + FQ ++R ++ W
Sbjct: 33 GESTVDFSSSEVDSWPGDSIACFIEDERHFVP---GHDYLSRFQTRSLDASAREDSVAWI 89
Query: 91 LKSQRRLNLSIDTVFRASSYFHRFVSINNY--NMKWEAAFMELLAVVCLYIAAKFGEVSI 148
LK Q N T + A +Y RF+ W M+LLAV CL +AAK E+ +
Sbjct: 90 LKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWP---MQLLAVACLSLAAKMEEILV 146
Query: 149 PTLHELQMEDLNNSFEVSRIQEMELTVLKALEWRVGCVTSYSYLELLIHQLDSS 202
P+L + Q+ + FE I+ MEL VL L+WR+ VT + ++ +++D S
Sbjct: 147 PSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPS 200
>AT5G67260.1 | CYCLIN D3%3B2 | Chr5:26836313-26837665 FORWARD
LENGTH=367 | 201606
Length = 367
Score = 74.3 bits (181), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 5/176 (2%)
Query: 52 SKNSFMVFLQKELQLMPININHLHSPFFQASRVRAILWFLKSQRRLNLSIDTVFRASSYF 111
+ + + KE + P + F + R A+ W L+ + + T A +YF
Sbjct: 65 DDDEILSLISKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYF 124
Query: 112 HRFVSINNYNMKWEAAFM-ELLAVVCLYIAAKFGEVSIPTLHELQMEDLNNSFEVSRIQE 170
RF++ + ++ + +M +L+AV L +AAK E+ +P L +LQ+E+ FE IQ
Sbjct: 125 DRFMT--SIKLQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQR 182
Query: 171 MELTVLKALEWRVGCVTSYSYLELLIHQLDSSLRYDYHICTISHR--VAPVHSTRF 224
MEL +L L+WR+ VT S+ + +I + S C R ++ + TRF
Sbjct: 183 MELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRF 238
>AT5G67260.2 | CYCLIN D3%3B2 | Chr5:26836313-26839548 FORWARD
LENGTH=404 | 201606
Length = 404
Score = 73.9 bits (180), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 5/176 (2%)
Query: 52 SKNSFMVFLQKELQLMPININHLHSPFFQASRVRAILWFLKSQRRLNLSIDTVFRASSYF 111
+ + + KE + P + F + R A+ W L+ + + T A +YF
Sbjct: 65 DDDEILSLISKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYF 124
Query: 112 HRFVSINNYNMKWEAAFM-ELLAVVCLYIAAKFGEVSIPTLHELQMEDLNNSFEVSRIQE 170
RF++ + ++ + +M +L+AV L +AAK E+ +P L +LQ+E+ FE IQ
Sbjct: 125 DRFMT--SIKLQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQR 182
Query: 171 MELTVLKALEWRVGCVTSYSYLELLIHQLDSSLRYDYHICTISHR--VAPVHSTRF 224
MEL +L L+WR+ VT S+ + +I + S C R ++ + TRF
Sbjct: 183 MELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRF 238
>AT5G65420.4 | CYCLIN D4%3B1 | Chr5:26142300-26143750 REVERSE
LENGTH=271 | 201606
Length = 271
Score = 72.4 bits (176), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 26/209 (12%)
Query: 1 MEKKKKKISLLCEE----DNYWLINSSPTFPNYYSTTTTTIMGSSSFYNTTSKEDSKNSF 56
M ++ ++SLLC E D +++ +P + MG S+ +S+
Sbjct: 1 MAEENLELSLLCTESNVDDEGMIVDETPI------EISIPQMG-------FSQSESEEII 47
Query: 57 MVFLQKELQLMPIN--INHLHSPFFQ--ASRVRAILWFLKSQRRLNLSIDTVFRASSYFH 112
M ++KE Q +P + I L S R A+ W K+ A +Y
Sbjct: 48 MEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKACEVHQFGPLCFCLAMNYLD 107
Query: 113 RFVSINNY--NMKWEAAFMELLAVVCLYIAAKFGEVSIPTLHELQMEDLNNSFEVSRIQE 170
RF+S+++ W ++LLAV CL +AAK E +P L +LQ+ D FE +Q
Sbjct: 108 RFLSVHDLPSGKGW---ILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQR 164
Query: 171 MELTVLKALEWRVGCVTSYSYLELLIHQL 199
MEL VL L+WR+ +T SY+ + ++
Sbjct: 165 MELLVLNKLKWRLRAITPCSYIRYFLRKM 193