BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0250.1
(1118 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 144 2e-35
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 112 3e-25
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 112 3e-25
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 110 2e-24
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 99 5e-21
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/517 (25%), Positives = 234/517 (45%), Gaps = 62/517 (11%)
Query: 649 AVPRYQMQCFAIPKGISDRIEVLQRTFRW---GKSKSIHTINWSAICLPKKMGGLGFRFP 705
A+P Y M CF +PK + +I + F W ++K +H W + K GG+GF+
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 706 ILDNHAFLSKLLWRLFRDPGSPWADILKAKYLTKE---NTPKKAKTHHSWIWKSLSKHVD 762
N A L K +WR+ P S A + K++Y K N P ++ S++WKS+ +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRP--SFVWKSIHASQE 119
Query: 763 KVTKLMFWDVNKGNNINIWYDYWIPNHP----------PPICNTTNSTLTKVSQLIIDN- 811
+ + V G +I IW W+ + P PP + S++ KVS LI ++
Sbjct: 120 ILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG 179
Query: 812 -HWNMNILTQCFNQDICNSILSIN-LQEHLDDTPRWMLTKTGKFTIKSMYYYLRTEHNEY 869
W +++ F + I + + D+ W T +G +T+KS Y+ L N+
Sbjct: 180 REWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 870 ETKE----------WNFIWNLPIQPKIKLFLWKCCTNSLPVRGKIG-QFIGQTFECVFC- 917
+ + + IW PKI+ FLWKC +NSLPV G + + + + C+ C
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299
Query: 918 RAHESLAHALLHCDLATVVWFHFSI-------FSGNITNLTDWIITWKDID---EQISSL 967
E++ H L C A + W SI ++ +I W+ + + E+ S L
Sbjct: 300 SCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL 359
Query: 968 FANILWQIWKARCD-----RCFSNVNILPMMVIDQIKGTPNLLKNQPPSQPSVRNT---L 1019
+LW++WK R + R F+ +L D + ++P V +
Sbjct: 360 VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 419
Query: 1020 WSPPTAPFIKINVDASFLEGTVMAGIGCIMFDD--DDNFIAASACNYRGQNAKEYECWAI 1077
W PP ++K N DA++ GIG ++ ++ + ++ A A + ++ E E
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALP-KLKSVLEAE---- 474
Query: 1078 VKALQWA----TSQKFDYLHIESDNSNIVQMLNGSQI 1110
++A++WA + +++Y+ ESD+ ++++LN +I
Sbjct: 475 LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEI 511
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 124/519 (23%), Positives = 206/519 (39%), Gaps = 41/519 (7%)
Query: 526 IKHLLFADDCIIFCQNSLVNINSLQLILDSFCSASGQMINFPKSTIFFSKNTHPKFKRMI 585
I HL FADD ++F +I + I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 586 IRNFKVHQSSNMDKYLGTHLFIGANKRKLFSSLTTQIQNKLSKWQASLLSPAGRSIVIQT 645
+ +F + +YLG L + L +I+ ++ KW A LS AGR +I +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 646 IAAAVPRYQMQCFAIPKGISDRIEVLQRTFRWGK---SKSIHTINWSAICLPKKMGGLGF 702
+ ++ + M F +P I+ + +F W + + WS +C PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 703 RFPILDNHAFLSKLLWRLFRDPGSPWADILKAKYLTKEN--TPKKAKTHHSWIWKSLSKH 760
R N L KL+WR+ S W L+ L K + + T SW+WK + KH
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 761 VDKVTKLMFWDVNKGNNINIWYDYW--------IPNHPPPICNTTNSTL-TKVSQLIIDN 811
+ + D++ G+N + W+D W + H C TL V++ ++++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRG--CIDMGITLHASVAEAVVNH 303
Query: 812 ----HWNMNILTQCFNQDICNSILSINLQEHLDDTPRWMLT-KTGKFTIKSMYYYLRTEH 866
H + +L +D+ + L +DT RW K + + T
Sbjct: 304 RPRRHRHDTLLRI---EDVIAEVRHQGLTSG-EDTVRWKGNGDIFKPCFNTKETWAATRE 359
Query: 867 NEYETKEWNFIWNLPIQPKIKLFLWKCCTNSLPVRGKIGQF-IGQTFECVFC-RAHESLA 924
+ + + +W PK + W N L ++ + G CV C E+
Sbjct: 360 PKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRD 419
Query: 925 HALLHCDLATVVWFHFS--IFSGNITNLTDWI---ITWKDIDEQISSL----FANILWQI 975
H C + VW + + S + TN + I +T K + ++ L F L +
Sbjct: 420 HLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYTFQLTLHSL 479
Query: 976 WKARCDRCFSNVNILPMMVIDQIKGTPNLLKNQPPSQPS 1014
WK R R V P ++ ++N+ S S
Sbjct: 480 WKERNGRRHGEV---PQAAAQMVRFLDKQVRNRISSIQS 515
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 124/519 (23%), Positives = 206/519 (39%), Gaps = 41/519 (7%)
Query: 526 IKHLLFADDCIIFCQNSLVNINSLQLILDSFCSASGQMINFPKSTIFFSKNTHPKFKRMI 585
I HL FADD ++F +I + I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 586 IRNFKVHQSSNMDKYLGTHLFIGANKRKLFSSLTTQIQNKLSKWQASLLSPAGRSIVIQT 645
+ +F + +YLG L + L +I+ ++ KW A LS AGR +I +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 646 IAAAVPRYQMQCFAIPKGISDRIEVLQRTFRWGK---SKSIHTINWSAICLPKKMGGLGF 702
+ ++ + M F +P I+ + +F W + + WS +C PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 703 RFPILDNHAFLSKLLWRLFRDPGSPWADILKAKYLTKEN--TPKKAKTHHSWIWKSLSKH 760
R N L KL+WR+ S W L+ L K + + T SW+WK + KH
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 761 VDKVTKLMFWDVNKGNNINIWYDYW--------IPNHPPPICNTTNSTL-TKVSQLIIDN 811
+ + D++ G+N + W+D W + H C TL V++ ++++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRG--CIDMGITLHASVAEAVVNH 303
Query: 812 ----HWNMNILTQCFNQDICNSILSINLQEHLDDTPRWMLT-KTGKFTIKSMYYYLRTEH 866
H + +L +D+ + L +DT RW K + + T
Sbjct: 304 RPRRHRHDTLLRI---EDVIAEVRHQGLTSG-EDTVRWKGNGDIFKPCFNTKETWAATRE 359
Query: 867 NEYETKEWNFIWNLPIQPKIKLFLWKCCTNSLPVRGKIGQF-IGQTFECVFC-RAHESLA 924
+ + + +W PK + W N L ++ + G CV C E+
Sbjct: 360 PKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRD 419
Query: 925 HALLHCDLATVVWFHFS--IFSGNITNLTDWI---ITWKDIDEQISSL----FANILWQI 975
H C + VW + + S + TN + I +T K + ++ L F L +
Sbjct: 420 HLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYTFQLTLHSL 479
Query: 976 WKARCDRCFSNVNILPMMVIDQIKGTPNLLKNQPPSQPS 1014
WK R R V P ++ ++N+ S S
Sbjct: 480 WKERNGRRHGEV---PQAAAQMVRFLDKQVRNRISSIQS 515
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 119/265 (44%), Gaps = 7/265 (2%)
Query: 526 IKHLLFADDCIIFCQNSLVNINSLQLILDSFCSASGQMINFPKSTIFFSKNTHPKFKRMI 585
I HL FADD ++F +I + I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 586 IRNFKVHQSSNMDKYLGTHLFIGANKRKLFSSLTTQIQNKLSKWQASLLSPAGRSIVIQT 645
+ +F + +YLG L + L +I+ ++ KW A LS AGR +I +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 646 IAAAVPRYQMQCFAIPKGISDRIEVLQRTFRWGKSK---SIHTINWSAICLPKKMGGLGF 702
+ ++ + M F +P I+ + +F W + + WS +C PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 703 RFPILDNHAFLSKLLWRLFRDPGSPWADILKAKYLTKEN--TPKKAKTHHSWIWKSLSKH 760
R N L KL+WR+ S W L+ L K + + T SW+WK + KH
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 761 VDKVTKLMFWDVNKGNNINIWYDYW 785
+ + D++ G+N + W+D W
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 107/425 (25%), Positives = 179/425 (42%), Gaps = 60/425 (14%)
Query: 732 LKAKYLTKENT-PKKAKTHHSWIWKSLSKHVDKVTKLMFWDVNKGNNINIWYDYWIPNHP 790
+KA+Y + K + S+ W SL + + K + G NI I D + +HP
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 791 PPICNTTNSTLTKVSQLIIDN---------HWNMNILTQCFNQDICNSILSINLQEHLD- 840
P NT + ++ I+N W+ + ++Q +Q I I L +
Sbjct: 61 PRPLNTEET----YKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKP 116
Query: 841 DTPRWMLTKTGKFTIKSMYYYLRTE-----------HNEYETKEWNFIWNLPIQPKIKLF 889
D W TG++T++S Y+ L + H + K IWNLPI PK+K F
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLK--TRIWNLPIMPKLKHF 174
Query: 890 LWKCCTNSLPVRGKI---GQFIGQTFECVFC-RAHESLAHALLHCDLATVVW-------- 937
LW+ + +L ++ G I + C C R +ES+ HAL C AT+ W
Sbjct: 175 LWRALSQALATTERLTTRGMRIDPS--CPRCHRENESINHALFTCPFATMAWRLSDSSLI 232
Query: 938 ---FHFSIFSGNITNLTDWI--ITWKDIDEQISSLFANILWQIWKARCDRCFSNVNILPM 992
+ F NI+N+ +++ T D + + ++W+IWKAR + F+ P
Sbjct: 233 RNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVW---LIWRIWKARNNVVFNKFRESPS 289
Query: 993 MVI--------DQIKGTPNLLKNQPPSQPSVRNTL-WSPPTAPFIKINVDASFLEGTVMA 1043
+ D + T + K P++ N + W P A ++K N DA F + A
Sbjct: 290 KTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEA 349
Query: 1044 GIGCIMFDDDDNFIA-ASACNYRGQNAKEYECWAIVKALQWATSQKFDYLHIESDNSNIV 1102
G I+ + I+ S N E E A++ ALQ + + + +E D ++
Sbjct: 350 TGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLI 409
Query: 1103 QMLNG 1107
++NG
Sbjct: 410 NLING 414