BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000118.1_g0340.1
         (236 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...   101   9e-27

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score =  101 bits (251), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 67/102 (65%), Gaps = 3/102 (2%)

Query: 1   MRGTRYGNLYQLLGTTITGDVAVGISGRDPMASTRLWHMRLGHMSEKGLSLMCGKGLLKD 60
           ++G R+ +LY L G+  TG+  +  + +D    TRLWH RL HMS++G+ L+  KG L  
Sbjct: 39  LKGNRHDSLYILQGSVETGESNLAETAKD---ETRLWHSRLAHMSQRGMELLVKKGFLDS 95

Query: 61  MKKPCMEFCEHCVFGKAHRVTFSTSKHMSKEILDYVHTDVRG 102
            K   ++FCE C++GK HRV FST +H +K  LDYVH+D+ G
Sbjct: 96  SKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137

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