BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0390.1
(218 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 112 2e-30
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 46 1e-05
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 112 bits (281), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Query: 3 TTEVDSGDYTPHSPPNPVFDVHHSDSPTTILITPLLTG-DNYASWSRAMKMALRAKDKFR 61
T++ DS Y P D+HH P+ I L DNY +W + LR KF
Sbjct: 11 TSDPDSPYYLPP-------DIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFG 60
Query: 62 FVDGSNPKPTSPNQLHS-WGRCNDLVSSWIINSIAPDMRSSVLYDESAADIWRNLYERFF 120
F+DG+ PKP + L+ W +CN +V W++NS+ + SV+Y E+A +W +L F
Sbjct: 61 FIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFV 120
Query: 121 QTNAPKIYQLKRAISSFKQEGHDVSSYFTQLKTLQDELQFLMVIDPCICGQG-----KSL 175
KIYQL+R +++ +Q G V YF +L + EL I C CG K
Sbjct: 121 PCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRA 180
Query: 176 LDRTNQERAMEFLQG--LHDRFSAIRSQILLMDPFPSILKIHSLV 218
+ +E+ EFL G L+ F A+ ++I+ P PS+ + ++V
Sbjct: 181 EEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMV 225
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 18/189 (9%)
Query: 32 ILITPLLTGDNYASWSRAMKMALRAKDKFRFVDGSN-PKPTSPNQLHSWGRCNDLVSSWI 90
I +T L NY W + + +DGS+ P P + + W + LV WI
Sbjct: 22 IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEKR---WKERDGLVKMWI 78
Query: 91 INSIAPDMRSSVL-YDESAADIWRNLYERFFQTNAPKIYQLKRAISSFKQEGHDVSSYFT 149
+I + +++ +A D+W +L F + Q + + + + V Y
Sbjct: 79 YGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQ 138
Query: 150 QLKTLQDELQFLMVIDPCICGQGKSLLDRTNQERAMEFLQGLHDRFSAIRSQILLMDPFP 209
+LK+L D L +D I DR M L GL +++ I + I PFP
Sbjct: 139 KLKSLSD---LLTNVDSPIS-------DRV---LVMHLLNGLTEKYDYILNVIKHKSPFP 185
Query: 210 SILKIHSLV 218
S + S++
Sbjct: 186 SFTEARSML 194