BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0410.1
(248 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 136 2e-36
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 136 2e-36
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 85 3e-20
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 136 bits (343), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 93/137 (67%), Gaps = 2/137 (1%)
Query: 110 SHNR-RPPTHLIDYICHSYPDSNVVYPLTQYLNFEQFSGSHQVFLNSVITTVEPTSFSQA 168
SH R R P +L DY CHS S ++ ++Q+L++E+ S + FL + EP+++++A
Sbjct: 34 SHRRTRKPAYLQDYYCHSVA-SLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEA 92
Query: 169 VKSPHWREAMSKEIAALESNNTWTITDLPSGKRAIGCKWVYKIKFKPDGSIECYKARLVA 228
+ W AM EI A+E+ +TW I LP K+ IGCKWVYKIK+ DG+IE YKARLVA
Sbjct: 93 KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVA 152
Query: 229 KGYTQIEGLDFHDTFAP 245
KGYTQ EG+DF +TF+P
Sbjct: 153 KGYTQQEGIDFIETFSP 169
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 136 bits (343), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 93/137 (67%), Gaps = 2/137 (1%)
Query: 110 SHNR-RPPTHLIDYICHSYPDSNVVYPLTQYLNFEQFSGSHQVFLNSVITTVEPTSFSQA 168
SH R R P +L DY CHS S ++ ++Q+L++E+ S + FL + EP+++++A
Sbjct: 34 SHRRTRKPAYLQDYYCHSVA-SLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEA 92
Query: 169 VKSPHWREAMSKEIAALESNNTWTITDLPSGKRAIGCKWVYKIKFKPDGSIECYKARLVA 228
+ W AM EI A+E+ +TW I LP K+ IGCKWVYKIK+ DG+IE YKARLVA
Sbjct: 93 KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVA 152
Query: 229 KGYTQIEGLDFHDTFAP 245
KGYTQ EG+DF +TF+P
Sbjct: 153 KGYTQQEGIDFIETFSP 169
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 85.1 bits (209), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 155 SVITTV--EPTSFSQAVKSPHWREAMSKEIAALESNNTWTITDLPSGKRAIGCKWVYKIK 212
++ TT+ EP S A+K P W +AM +E+ AL N TW + P + +GCKWV+K K
Sbjct: 19 TITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTK 78
Query: 213 FKPDGSIECYKARLVAKGYTQIEGLDFHDTFAP 245
DG+++ KARLVAKG+ Q EG+ F +T++P
Sbjct: 79 LHSDGTLDRLKARLVAKGFHQEEGIYFVETYSP 111