BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0420.1
(284 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 294 5e-92
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 294 5e-92
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 214 3e-69
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 94 6e-24
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 294 bits (752), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 146/287 (50%), Positives = 196/287 (68%), Gaps = 5/287 (1%)
Query: 1 MKLPPDFS-KQGES----KVCRLQKSLYGLKQPFRQWFSKFSSVLIKKGFTQSLSDYSLF 55
MKLPP ++ +QG+S VC L+KS+YGLKQ RQWF KFS LI GF QS SD++ F
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYF 269
Query: 56 SLCTSSVHLYVLVYVDDIVITGNDESAISKLKSFLHTTFSLLDLGPLKYFLGIEVSRSSK 115
T+++ L VLVYVDDI+I N+++A+ +LKS L + F L DLGPLKYFLG+E++RS+
Sbjct: 270 LKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAA 329
Query: 116 GIFICQRKYALGIIKDSGLSACRPSPFPIEQKLRLSPSDGDPLPDPTVYRRMIGRLLYLT 175
GI ICQRKYAL ++ ++GL C+PS P++ + S G D YRR+IGRL+YL
Sbjct: 330 GINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQ 389
Query: 176 VTRPDIFYAVNNLSQFLQKPSATHLDAAHRVLRYLKGSIGHGLLLSSSSSLHITGYCDSD 235
+TR DI +AVN LSQF + P H A ++L Y+KG++G GL SS + + + + D+
Sbjct: 390 ITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDAS 449
Query: 236 WAGCPSTRRSTTGYFTMLGSSPLSWKSKKQPTIVKSSAEAEYSLVSF 282
+ C TRRST GY LG+S +SWKSKKQ + KSSAEAEY +SF
Sbjct: 450 FQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 496
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 294 bits (752), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 146/287 (50%), Positives = 196/287 (68%), Gaps = 5/287 (1%)
Query: 1 MKLPPDFS-KQGES----KVCRLQKSLYGLKQPFRQWFSKFSSVLIKKGFTQSLSDYSLF 55
MKLPP ++ +QG+S VC L+KS+YGLKQ RQWF KFS LI GF QS SD++ F
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYF 269
Query: 56 SLCTSSVHLYVLVYVDDIVITGNDESAISKLKSFLHTTFSLLDLGPLKYFLGIEVSRSSK 115
T+++ L VLVYVDDI+I N+++A+ +LKS L + F L DLGPLKYFLG+E++RS+
Sbjct: 270 LKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAA 329
Query: 116 GIFICQRKYALGIIKDSGLSACRPSPFPIEQKLRLSPSDGDPLPDPTVYRRMIGRLLYLT 175
GI ICQRKYAL ++ ++GL C+PS P++ + S G D YRR+IGRL+YL
Sbjct: 330 GINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQ 389
Query: 176 VTRPDIFYAVNNLSQFLQKPSATHLDAAHRVLRYLKGSIGHGLLLSSSSSLHITGYCDSD 235
+TR DI +AVN LSQF + P H A ++L Y+KG++G GL SS + + + + D+
Sbjct: 390 ITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDAS 449
Query: 236 WAGCPSTRRSTTGYFTMLGSSPLSWKSKKQPTIVKSSAEAEYSLVSF 282
+ C TRRST GY LG+S +SWKSKKQ + KSSAEAEY +SF
Sbjct: 450 FQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 496
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 214 bits (546), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 149/221 (67%), Gaps = 1/221 (0%)
Query: 64 LYVLVYVDDIVITGNDESAISKLKSFLHTTFSLLDLGPLKYFLGIEVSRSSKGIFICQRK 123
+Y+L+YVDDI++TG+ + ++ L L +TFS+ DLGP+ YFLGI++ G+F+ Q K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 124 YALGIIKDSGLSACRPSPFPIEQKLRLSPSDGDPLPDPTVYRRMIGRLLYLTVTRPDIFY 183
YA I+ ++G+ C+P P+ KL S S PDP+ +R ++G L YLT+TRPDI Y
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAK-YPDPSDFRSIVGALQYLTLTRPDISY 119
Query: 184 AVNNLSQFLQKPSATHLDAAHRVLRYLKGSIGHGLLLSSSSSLHITGYCDSDWAGCPSTR 243
AVN + Q + +P+ D RVLRY+KG+I HGL + +S L++ +CDSDWAGC STR
Sbjct: 120 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 179
Query: 244 RSTTGYFTMLGSSPLSWKSKKQPTIVKSSAEAEYSLVSFNG 284
RSTTG+ T LG + +SW +K+QPT+ +SS E EY ++
Sbjct: 180 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTA 220
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 94.0 bits (232), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 57/82 (69%)
Query: 172 LYLTVTRPDIFYAVNNLSQFLQKPSATHLDAAHRVLRYLKGSIGHGLLLSSSSSLHITGY 231
+YLT+TRPD+ +AVN LSQF + A ++VL Y+KG++G GL S++S L + +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 232 CDSDWAGCPSTRRSTTGYFTML 253
DSDWA CP TRRS TG+ +++
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82