BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0470.1
(266 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 66 2e-13
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 60 3e-10
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 60 3e-10
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 60 7e-10
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 48 4e-06
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 65.9 bits (159), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 55 LINGWPGTTFFPTRGIRQGDPLSPFLFTIAMEGLSRLINVDHEGNKFQGFPTNNPNLKIS 114
+ING P P+RG+RQGDPLSP+LF + E LS L E + G +N + +I+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 115 HLLFADDCIIFGRNSLDNIHTLKHILKVFCEA----SGQMINYSKSNIFY 160
HLLFADD +S I I +F + G +N+ SN+++
Sbjct: 73 HLLFADDT-----SSARWIPLAAQIWPIFFLSMRLFQGNPVNHPMSNLYF 117
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 113 ISHLLFADDCIIFGRNSLDNIHTLKHILKVFCEASGQMINYSKSNIFYSKNSHPKFKRLI 172
I+HL FADD ++F +I + I F + SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 173 MKTLKVKYASTSEKYLGAQLFIGAQKKKVFNDIFLKIKNKLEKWNHNFLSQAGRTIIIST 232
+ + + +YLG L + + KI+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 233 IAAAVPRYQMQCFTLPKGIARAF-RICKS 260
+ ++ + M F LP + IC S
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSS 155
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 113 ISHLLFADDCIIFGRNSLDNIHTLKHILKVFCEASGQMINYSKSNIFYSKNSHPKFKRLI 172
I+HL FADD ++F +I + I F + SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 173 MKTLKVKYASTSEKYLGAQLFIGAQKKKVFNDIFLKIKNKLEKWNHNFLSQAGRTIIIST 232
+ + + +YLG L + + KI+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 233 IAAAVPRYQMQCFTLPKGIARAF-RICKS 260
+ ++ + M F LP + IC S
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSS 155
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 113 ISHLLFADDCIIFGRNSLDNIHTLKHILKVFCEASGQMINYSKSNIFYSKNSHPKFKRLI 172
I+HL FADD ++F +I + I F + SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 173 MKTLKVKYASTSEKYLGAQLFIGAQKKKVFNDIFLKIKNKLEKWNHNFLSQAGRTIIIST 232
+ + + +YLG L + + KI+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 233 IAAAVPRYQMQCFTLPKG-IARAFRICKS 260
+ ++ + M F LP I IC S
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSS 155
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 2 KGSTGYFGLKLDMSKAFDRIEWNFLTDIMNKLGYSEHWIKMITQC 46
KG G+ LKLD+ KA+DRI W++L D + G+ E W+ I +
Sbjct: 44 KGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGFPEVWLPEIARS 88