BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0480.1
(442 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 108 3e-25
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 82 4e-17
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 83 7e-17
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 80 2e-16
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 80 4e-16
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 108 bits (271), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 121/495 (24%), Positives = 201/495 (40%), Gaps = 94/495 (18%)
Query: 1 MLSKLAWRIKSEPNSIWVQFLKAKYFSHTENP--SPAKPHHSWHWKNISKQ---LNNIEK 55
+L K WR+ S P S+ + K++YF H +P +P S+ WK+I L +
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYF-HKSDPLNAPLGSRPSFVWKSIHASQEILRQGAR 126
Query: 56 YTAG---------------------------------------KFTMLIEES--KWNEVL 74
G K + LI+ES +W + +
Sbjct: 127 AVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDV 186
Query: 75 LNNTFDSNITNLVLSI-PIADNDDDQRKWTLTKSGKFSVKSLYQNLCTSIN--------S 125
+ F L+ + P D W T SG ++VKS Y L IN S
Sbjct: 187 IEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVS 246
Query: 126 PLPLYPNWNFIWAISVIPRIKIFIWKICTKALPVRKRIG-KYIDNNLSCPNCTDI-ETIE 183
L P + IW P+I+ F+WK + +LPV + +++ +C C ET+
Sbjct: 247 EPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVN 306
Query: 184 HALLHCPLARNIWFYFNIQSEHIPSVAD-------WIF-------TWEQESQISITVDNT 229
H L C AR W +I AD W+F WE+ SQ+
Sbjct: 307 HLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL------- 359
Query: 230 HFATILWMIWKIRCDHCFQ-HEINNMDKIHNM--------ISTFPKYTEVTPTITKIETG 280
+LW +WK R + F+ E N + + I T + P + + G
Sbjct: 360 -VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCG 418
Query: 281 KWNPPDSSSLKINVDASFLDIQNVVGMSLVVHN--NESKFIEANATTTRSRNAEESEAIA 338
+W PP +K N DA++ G+ V+ N E K++ A A + ++ E+E A
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLEAELEA 477
Query: 339 ILNGMIWAESHKYKKIIIESDNKKIIQHLQNQRNEIQWQSKIHIKKIQDIKRRLDKVKFS 398
+ ++ +Y +I ESD++ +I+ L N +EI K I+ +Q + + +VKF
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIEILNN--DEIWPSLKPTIQDLQRLLSQFTEVKFV 535
Query: 399 YTNRKFNQVADKLAK 413
+ R+ N +A+++A+
Sbjct: 536 FIPREGNTLAERVAR 550
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 22/289 (7%)
Query: 142 IPRIKIFIWKICTKALPVRKR-IGKYIDNNLSCPNCTDIETIEHALLHCPLARNIWFYFN 200
+P+IK+F+WK ALPV + + ++I + C C ET H L HC A +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 201 IQSEHIPSVADWIFTWEQESQISITVD--NTHFAT----ILWMIWKIRCDHCFQHE-INN 253
+Q HIP + I + +I + H AT I W IWK R FQ+ +
Sbjct: 61 LQLGHIP-IGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSV 119
Query: 254 MDKIHNMISTFPKYTEVTPTITKIETGKWNPPDSSSLKIN----VDASFLDIQNVVGMSL 309
++ + + + + K+ P +++L + VDA++ ++ G
Sbjct: 120 IETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSGW 179
Query: 310 VVH---NNESKFIEANATTTRSRNAEESEAIAILNGMIWAESHKYKKIIIESDNKKIIQH 366
V ++E + +A R + +EA AI + M+ A + +++ SD+K I+
Sbjct: 180 VFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDA 239
Query: 367 LQN--QRNEIQWQSKIHIKKIQDIKRRLDKVKFSYTNRKFNQVADKLAK 413
L + NEI + +I+ I+ R + F + R N +AD AK
Sbjct: 240 LNSNVSLNEIFGL----LVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 99/437 (22%), Positives = 186/437 (42%), Gaps = 60/437 (13%)
Query: 48 KQLNNIEKYTAGKFTMLIEESK----WNEVLLNNTFDSNITNLVLSIPIADNDD-DQRKW 102
+ LN E Y L E W++ ++ D + + I +A + D+ W
Sbjct: 62 RPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIW 121
Query: 103 TLTKSGKFSVKSLYQNLC-------TSINSPLPLYPNWNFIWAISVIPRIKIFIWKICTK 155
+G+++V+S Y L +IN P IW + ++P++K F+W+ ++
Sbjct: 122 NYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQ 181
Query: 156 ALPVRKRI---GKYIDNNLSCPNC-TDIETIEHALLHCPLARNIW-----------FYFN 200
AL +R+ G ID SCP C + E+I HAL CP A W N
Sbjct: 182 ALATTERLTTRGMRIDP--SCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSN 239
Query: 201 IQSEHIPSVADWIFTWEQESQISITVDNTHFATILWMIWKI---RCDHCF--------QH 249
E+I ++ +++ Q++ T+ + H +W+IW+I R + F +
Sbjct: 240 DFEENISNILNFV----QDT----TMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKT 291
Query: 250 EINNMDKIHNMISTFPKYTEVTPTITKIETGK--WNPPDSSSLKINVDASFLDIQNVVGM 307
++ + H+ ++ + + +I K W P ++ +K N DA F D+Q +
Sbjct: 292 VLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF-DVQKLEAT 350
Query: 308 SL-VVHNNESKFIE-ANATTTRSRNAEESEAIAILNGMIWAESHKYKKIIIESDNKKIIQ 365
++ N+ I + + N E+E A+L + Y ++ +E D Q
Sbjct: 351 GGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGD----CQ 406
Query: 366 HLQNQRNEIQWQSKI--HIKKIQDIKRRLDKVKFSYTNRKFNQVADKLAKWARKRNRTQS 423
L N N I + S + H++ I + ++F + RK N++A LAK+ + S
Sbjct: 407 TLINLINGISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYS 466
Query: 424 W-NNVPFMISKLYCNKT 439
++P + + +CN +
Sbjct: 467 GSGSLPIWLDRYFCNDS 483
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 144/329 (43%), Gaps = 35/329 (10%)
Query: 136 IWAISVIPRIKIFIWKICTKALPVRKRIGK-YIDNNLSCPNC-TDIETIEHALLHCPLAR 193
IW + P+IK F+WK+ + AL + + +I N+ C C + ET +H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 194 NIWFYFNIQSEHIPSVADWIFTWEQESQISITVDNTHFAT------ILWMIWKIRCDHCF 247
+W I + + + + T + E +S + N ILW +WK R F
Sbjct: 78 QVWRASGIPHQELRTTGITMET-KMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVF 136
Query: 248 QHEI----NNMDKIHNMISTFPKYTEVTPTITK-----------IETGKWNPPDSSSLKI 292
Q + N + + N + + ++ + + KW P S+ +K
Sbjct: 137 QQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKY 196
Query: 293 NVDASF-LDIQNVVGMSLVVHNNESKFIEANATTTRSRNAEESEAIAILNGMIWAESHKY 351
N D +F +N L+ N A + + ++ ESE A++ M A S Y
Sbjct: 197 NYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGY 256
Query: 352 KKIIIESDNKKIIQHLQNQR---NEIQWQSKIHIKKIQDIKRRLDKVKFSYTNRKFNQVA 408
+K+I E D+K++ + + N++ W I++ + ++R ++ F + R NQ A
Sbjct: 257 RKVIFEGDSKQVEELMNNEKLNFGRFNW-----IREGRFWQKRFEEAVFKWVPRTNNQPA 311
Query: 409 DKLAKWARKRNRTQSWN-NVP-FMISKLY 435
D LAK + N++ ++ VP F+ S LY
Sbjct: 312 DILAKHHLQPNQSFKFHYYVPAFITSTLY 340
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 137/328 (41%), Gaps = 32/328 (9%)
Query: 136 IWAISVIPRIKIFIWKICTKALPVRKRI-GKYIDNNLSCPNCT-DIETIEHALLHCPLAR 193
IW + V P+IK F+W+ T AL R+ + ID + C C + ETI H + +CP +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 194 NIWFYFNI----QSEHIPSVADWIFTWEQESQISITVDNTHFAT--ILWMIWKIRCDHCF 247
++W NI Q S D + Q S+ T F I+W +WK R F
Sbjct: 97 SVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLF 156
Query: 248 QHEINNMD-KIHNMISTFPKYTEVTPT--------------ITKIETGKWNPPDSSSLKI 292
Q + + D + I ++ T ++ ++ +WNPP +K
Sbjct: 157 QQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKC 216
Query: 293 NVDASFLDIQNVVGMSLVVHN-NESKFIEANATTTRSRNAEESEAIAILNGM--IWAESH 349
N D+ + + N + NA S + +EA+ L+ + IWA H
Sbjct: 217 NFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWA--H 274
Query: 350 KYKKIIIESDNKKIIQHLQNQRNEIQWQSKIHIKKIQDIKRRLDKVKFSYTNRKFNQVAD 409
+ + ESD+K ++ + N + + I+ I+ +L + NR+ N AD
Sbjct: 275 GLRYVWFESDSKSLVTLINNGEDHSLLGTLIY--DIRHWMLKLPYCSLEFVNRERNSAAD 332
Query: 410 KLAKWARKRNRT-QSWNNVP-FMISKLY 435
LA R+ QS+ P ++++ LY
Sbjct: 333 ALASHVHARDPLFQSYTTPPSWLVNTLY 360