BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000118.1_g0490.1
         (208 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    58   2e-10
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C...    50   3e-07
AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C...    49   1e-06

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 118 DMAHIWHLRYGHLNYRGLKLLKEKDMVVDLPYISKNDEICEGCIYEKMHRLPFPKVSSRA 177
           D   +WH R  H++ RG++LL +K  + D   +S + + CE CIY K HR+ F       
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFL-DSSKVS-SLKFCEDCIYGKTHRVNFSTGQHTT 124

Query: 178 RAPLELVHADIFGPTKTP 195
           + PL+ VH+D++G    P
Sbjct: 125 KNPLDYVHSDLWGAPSVP 142


>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 1   MTGNRELFVELEKNVSTQVKLDDGKLKPAGGKGVIAVATNKGDK-FIHDVLYVPGITQNL 59
           MT   + F  L++     V   DG +    GKG + +   +G K  I +V++VPG+ +N+
Sbjct: 290 MTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNV 349

Query: 60  LSVGQLMRKNYSLRFD-NGECEIVDKRTNLIVATVQMTSNNVFYL 103
           LS G+++ K YS+     GEC + D+  N +   + MT      L
Sbjct: 350 LSFGKMVSKRYSISTGMQGECIVCDRGENKLGDAMWMTDETEMAL 394


>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 1   MTGNRELFVELEKNVSTQVKLDDG-----KLKPAGGKGVIAVATNKGDKFIHDVLYVPGI 55
           MT + + F  L+++   +VK   G      +    G G +   TN+G+K I +VLYVPGI
Sbjct: 279 MTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEGNKTIKNVLYVPGI 338

Query: 56  TQNLLSVGQLMRKNYSLRFDNGE-CEIVDKRT 86
             N LSV QL R  + +  +    C + D+ T
Sbjct: 339 EGNALSVSQLKRNGFEVSMERRTGCFVWDRTT 370

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