BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0540.1
(308 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69160.1 | suppressor | Chr1:26000315-26001280 FORWARD LENGTH... 61 3e-10
AT3G13980.1 | SKI/DACH domain protein | Chr3:4619189-4620262 REV... 60 7e-10
AT3G42800.1 | AF-like protein | Chr3:14905837-14906862 FORWARD L... 55 3e-08
AT1G54200.1 | DNA mismatch repair Msh6-like protein | Chr1:20235... 45 3e-05
>AT1G69160.1 | suppressor | Chr1:26000315-26001280 FORWARD
LENGTH=321 | 201606
Length = 321
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 16 SVHRRKDSSELDVFEASMYFYGGTQTSAVNGGDGTTITNTLTPKTMREELRQQFEV--SQ 73
S+ +++S ELDVFEA++YF G + S+ + G T REE +++ +
Sbjct: 19 SLTHKRNSEELDVFEAAVYF-GYNEASSGDHGH----TQKYGYNAAREENPRRWGILGGG 73
Query: 74 RRMSLDINIRS----------NSINNPPPPLKQQIKEKKYKQPISPGGRLASFLNSIFNQ 123
RR+SLD+ IR + + +K+++ ++KQP SPGG++ASFLNS+F+Q
Sbjct: 74 RRISLDLPIRCSEQVYHLQQDHHEKHEVTTIKERLGNVRHKQPSSPGGKIASFLNSLFHQ 133
>AT3G13980.1 | SKI/DACH domain protein | Chr3:4619189-4620262
REVERSE LENGTH=357 | 201606
Length = 357
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 91/211 (43%), Gaps = 36/211 (17%)
Query: 101 KKYKQPISPGGRLASFLNSIFNQKSSKNNKKSKSVKDHEVQESSNEGTERRRRSSVSHFG 160
KK KQPISPGGRLA+FLNS+F ++ K K+ V+E + T S
Sbjct: 163 KKVKQPISPGGRLATFLNSLFTNAATNPKKHKKTTTVAVVEEPHSSSTCSSASSFSR--- 219
Query: 161 SFWSSETKSINSSSSSDRITPSGTHAKNSSKPYEDHRRNSDYKQVSSLTKKVTNNSS--- 217
S S S S S R P N + SS T N+
Sbjct: 220 SCLSKTPSSSGKSKRSVRFCPV----------------NVILDEDSSFTMPYAYNNERLY 263
Query: 218 -SNTSLGIDEKSKSMDLTWLDEKLKLIEELSEKNKKDKTWV-----DEDDGGESDSSSDL 271
+N + ++E + + L+ KNK T + D++D S +SSDL
Sbjct: 264 DNNEAKRVEEHRRVIQAAK-----DLLRTYHNKNKVTTTNINNVEEDDEDDAASCASSDL 318
Query: 272 FELQNYD-LGI--YSSGLPVYETTHIESIKR 299
FEL+N +GI Y LPVYETT ++++ R
Sbjct: 319 FELENLSAIGIERYREELPVYETTRLDNMNR 349
>AT3G42800.1 | AF-like protein | Chr3:14905837-14906862 FORWARD
LENGTH=341 | 201606
Length = 341
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 28/228 (12%)
Query: 76 MSLDINIRSNSINNPPPPLKQQIKE-KKYKQPISPGGRLASFLNSIFNQKSSKNNKKSKS 134
M D + S S ++ P + I+E K+ KQP+SPG RL SFLNSIF Q ++K K
Sbjct: 125 MDNDSRLFSKSDDDKKPKAVKIIEELKRSKQPVSPGARLTSFLNSIF-QSNAKKVKLCSV 183
Query: 135 VKDHEVQESSNEGTERRRRSSVSHFGSFWSSETKSINSSSSSDRITPSGTHAKNSSKPYE 194
K +V+ SS++ R R+ + + +SI R P + Y
Sbjct: 184 GKTTDVKSSSSKSCFSRTRNKTDNNNNNCKKLERSI-------RFYPVRVTIDGDCRDYA 236
Query: 195 DHRRNSDYKQVSSLTKKVTNNSSSNTSLGIDEKSKSMD----LTWLDEKLKLIEELSEKN 250
K ++ + K + ++ + + E+ K+ D T + + L ++ N
Sbjct: 237 Q-------KHITRVRKPIPEFTAKKS---VKEEIKTNDHHTEFTCITRNIGL-KDFVRSN 285
Query: 251 KKDKTWVDEDDGGESDSSSDLFELQNYDLGI--YSSGLPVYETTHIES 296
K + +E++ S SSSDLFEL +Y +G+ Y LPVYETT ++
Sbjct: 286 KYEGK--EEEEDAWSHSSSDLFELDSYRIGMGRYLKELPVYETTDFKT 331
>AT1G54200.1 | DNA mismatch repair Msh6-like protein |
Chr1:20235855-20236955 FORWARD LENGTH=366 | 201606
Length = 366
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 101 KKYKQPISPGGRLASFLNSIF 121
KK KQPISPGGRLA+FLNSIF
Sbjct: 164 KKVKQPISPGGRLATFLNSIF 184