BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0570.1
(619 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 94 5e-22
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 93.6 bits (231), Expect = 5e-22, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 116 LDHIRAVFEVMRQNSLFMNIPKSFFFLEKVYFLGF--IISKSGMKVDPAKVRAISEWPTP 173
++H+ V ++ Q+ + N K F ++ +LG IIS G+ DPAK+ A+ WP P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 174 SSPSEVRSFNGLASFYKRFIRDFSTVMAPLTDCLKKGKFLWGSQQDESFSTIKKRLCSAP 233
+ +E+R F GL +Y+RF++++ ++ PLT+ LKK W +F +K + + P
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120
Query: 234 VLAFSDFSKLF 244
VLA D F
Sbjct: 121 VLALPDLKLPF 131