BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0750.1
(96 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15610.2 | Proteasome component (PCI) domain protein | Chr5:5... 109 1e-29
AT3G02200.2 | Proteasome component (PCI) domain protein | Chr3:4... 107 6e-29
AT5G15610.1 | Proteasome component (PCI) domain protein | Chr5:5... 94 8e-24
AT3G02200.1 | Proteasome component (PCI) domain protein | Chr3:4... 51 1e-08
>AT5G15610.2 | Proteasome component (PCI) domain protein |
Chr5:5079579-5081929 FORWARD LENGTH=413 | 201606
Length = 413
Score = 109 bits (272), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Query: 5 GKVPC-----LVAVTDDEVELWVVKAIVAKLLDCKMDQINEIVIVSRSTERLFGPHQWQN 59
GK+P + V D+EVELWVVKAI AKL+ CKMDQ+N++VIVSR ER FG QWQ+
Sbjct: 313 GKIPYASIKNTLQVNDEEVELWVVKAITAKLVACKMDQMNQVVIVSRCAEREFGQKQWQS 372
Query: 60 LQSKLSIWRSNIANVITTIQANKITEDAHGVQGAA 94
L++KL+ WR N+ NVI+TI++NK TE+ AA
Sbjct: 373 LRTKLAAWRDNVRNVISTIESNKATEEGTQTSSAA 407
>AT3G02200.2 | Proteasome component (PCI) domain protein |
Chr3:406692-408919 FORWARD LENGTH=417 | 201606
Length = 417
Score = 107 bits (267), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 76/105 (72%), Gaps = 13/105 (12%)
Query: 5 GKVPCL-----VAVTDDEVELWVVKAIVAKLLDCKMDQINEIVIVSRSTERLFGPHQWQN 59
GK+P + V + +VELW+VKAI AKL++CKMDQ+N+++IVSRS+ER FG QWQ+
Sbjct: 313 GKIPYTSIKDTLQVNEQDVELWIVKAITAKLIECKMDQMNQVLIVSRSSEREFGTKQWQS 372
Query: 60 LQSKLSIWRSNIANVITTIQANKITEDAH--------GVQGAATR 96
L++KL+ W+ NI+++ITTI++NK+TE+ +QG + R
Sbjct: 373 LRTKLATWKDNISSIITTIESNKVTEEGSQASSSSAAAIQGLSVR 417
>AT5G15610.1 | Proteasome component (PCI) domain protein |
Chr5:5079579-5081929 FORWARD LENGTH=442 | 201606
Length = 442
Score = 94.0 bits (232), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 69/124 (55%), Gaps = 34/124 (27%)
Query: 5 GKVPC-----LVAVTDDEVELWVVKAIVAKLLDCKMDQINEIVIV--------------- 44
GK+P + V D+EVELWVVKAI AKL+ CKMDQ+N++VIV
Sbjct: 313 GKIPYASIKNTLQVNDEEVELWVVKAITAKLVACKMDQMNQVVIVRQVSNLLLFRFICVN 372
Query: 45 --------------SRSTERLFGPHQWQNLQSKLSIWRSNIANVITTIQANKITEDAHGV 90
SR ER FG QWQ+L++KL+ WR N+ NVI+TI++NK TE+
Sbjct: 373 PKSHILVLHICSCISRCAEREFGQKQWQSLRTKLAAWRDNVRNVISTIESNKATEEGTQT 432
Query: 91 QGAA 94
AA
Sbjct: 433 SSAA 436
>AT3G02200.1 | Proteasome component (PCI) domain protein |
Chr3:406692-408675 FORWARD LENGTH=364 | 201606
Length = 364
Score = 51.2 bits (121), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 5/51 (9%)
Query: 5 GKVPCL-----VAVTDDEVELWVVKAIVAKLLDCKMDQINEIVIVSRSTER 50
GK+P + V + +VELW+VKAI AKL++CKMDQ+N+++IV + R
Sbjct: 313 GKIPYTSIKDTLQVNEQDVELWIVKAITAKLIECKMDQMNQVLIVRQPLFR 363