BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0830.1
(119 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 62 4e-13
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase)
| ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 61.6 bits (148), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 26 LVDGRPGPTFYPSRGIRQGDPLSPFLFFIAMEGLSQLINADHDGNKFKGFPNNNSNLNIS 85
+++G P PSRG+RQGDPLSP+LF + E LS L + + G +N++ I+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 86 HLLFADD 92
HLLFADD
Sbjct: 73 HLLFADD 79