BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0870.1
(205 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 61 7e-11
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 59 4e-10
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 56 3e-09
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 55 1e-08
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 51 2e-07
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 61.2 bits (147), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 39/223 (17%)
Query: 7 LAPNWNFILSFQVVPRIKLFIWKICVKALPVRERIG-KYIDNN---LNCPNCNVVETLEH 62
L P + I Q P+I+ F+WK +LPV + +++ + CP+C ET+ H
Sbjct: 250 LNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK--ETVNH 307
Query: 63 ALLHCPLAKNIWFYFNII-------SERITSIRDWIF-------TWEDTPDASQTYNGTH 108
L C A+ W +I ++ I W+F WE ASQ
Sbjct: 308 LLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEK---ASQL----- 359
Query: 109 LATIMWNIWKIRCDHCFQ-HEINSLEQITSMIMNFPQYTKKTQKNTKKTQ--------DK 159
+ ++W +WK R + F+ E N+ E + + ++ +T+ + T+ +
Sbjct: 360 VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 419
Query: 160 WIPPMLGWVKINVDASFININEIAGFGLIMHN--NESTYIEAR 200
W PP WVK N DA++ NE G G ++ N E ++ AR
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGAR 462
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 58.5 bits (140), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 29/189 (15%)
Query: 14 ILSFQVVPRIKLFIWKICVKALPVRERI-GKYIDNNLNCPNCNVVE-TLEHALLHCPLAK 71
I V P+IK F+W+ AL R+ + ID + C C + E T+ H + +CP +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 72 NIWFYFNIISERITSIRDWIFTWEDTPD------ASQTYNGTHLAT---IMWNIWKIRCD 122
++W NII I + ++ED + +QT N IMW +WK R
Sbjct: 97 SVWRSANII---IGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNV 153
Query: 123 HCFQHEINSLE-------QITSMIMNFPQYTKKTQ--------KNTKKTQDKWIPPMLGW 167
FQ + S + Q + +N + T+ T + +++ +W PP GW
Sbjct: 154 FLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGW 213
Query: 168 VKINVDASF 176
VK N D+ +
Sbjct: 214 VKCNFDSGY 222
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 55.8 bits (133), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 20 VPRIKLFIWKICVKALPVRER-IGKYIDNNLNCPNCNVVETLEHALLHCPLAKNIWFYFN 78
+P+IKLF+WK ALPV + + ++I + +C C ET H L HC A +W N
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVW---N 57
Query: 79 IISERITSIRDWIFTWEDTPDASQTY----NGTHLAT----IMWNIWKIRCDHCFQHE-I 129
+ ++ I E +T G H AT I W+IWK R FQ+
Sbjct: 58 LAPLQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHF 117
Query: 130 NSLEQITSMIMN 141
+ +E +T + +
Sbjct: 118 SVIETVTKAVQD 129
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 19 VVPRIKLFIWKICVKALPVRERI---GKYIDNNLNCPNCNVV-ETLEHALLHCPLAKNIW 74
++P++K F+W+ +AL ER+ G ID +CP C+ E++ HAL CP A W
Sbjct: 167 IMPKLKHFLWRALSQALATTERLTTRGMRIDP--SCPRCHRENESINHALFTCPFATMAW 224
Query: 75 -----------FYFNIISERITSIRDWIFTWEDTPDASQTYNGTHLATIMWNIWKIRCDH 123
N E I++I +++ +DT ++ ++W IWK R +
Sbjct: 225 RLSDSSLIRNQLMSNDFEENISNILNFV---QDT--TMSDFHKLLPVWLIWRIWKARNNV 279
Query: 124 CF-------QHEINSLEQITSMIMNFPQYTKKTQKNTKKTQD---KWIPPMLGWVKINVD 173
F + S + T +N Q KKT T++ + +W P +VK N D
Sbjct: 280 VFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFD 339
Query: 174 ASFININEIAGFGLIMHNNESTYIE 198
A F A G I+ N+ T I
Sbjct: 340 AGFDVQKLEATGGWIIRNHYGTPIS 364
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 24/207 (11%)
Query: 14 ILSFQVVPRIKLFIWKICVKALPVRERIGK-YIDNNLNCPNC-NVVETLEHALLHCPLAK 71
I + P+IK F+WK+ AL + + + +I N+ C C ET +H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 72 NIWFYFNIISERITSIRDWIFTWEDTPDASQTYNGT----HLAT-IMWNIWKIRCDHCFQ 126
+W I + + + + T + +S N +LA I+W +WK R FQ
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 127 H--------------EINSLEQITSMIMNFPQ--YTKKTQKNTKKTQDKWIPPMLGWVKI 170
++ E + + + Q ++ + Q+ T + KW P W+K
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTM-ARTKWQRPPSTWIKY 196
Query: 171 NVDASFININEIAGFGLIMHNNESTYI 197
N D +F + A G +M + Y+
Sbjct: 197 NYDGAFNHQTRNAKAGWLMRDENGVYM 223