BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0880.1
(387 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 122 2e-30
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 122 2e-30
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 122 7e-30
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 97 6e-22
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 81 3e-16
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 122 bits (307), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 125/269 (46%), Gaps = 15/269 (5%)
Query: 100 ISHLLFADDCIIFGRNSLENIHTLKSILKMFCDSSGQMINYSKSNIFYSKNSHPKFKRLI 159
I+HL FADD ++F +I + I F D SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 160 TRTLKVKYASTSEKYLGAQLFIGANKKKVFNDIIDKIKNKLDKWNYNFLSQAGRTIVIST 219
+ + +YLG L + +++KI+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 IAAAVPRYQMQCFALPKGTSKSISTLQKSFWWGRSKGICTK---SWASICTPKKMGGLGI 276
+ ++ + M F LP K I ++ SF W + K +W+ +CTPK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 277 HNTELDNQAMLSKLAWKIKSEPKAIWVQFL------KAKYYNNSEHPNLAKSHHSWHWKN 330
+ + N+ L KL W++ S ++WVQ+L K +++ S + L SW WK
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKK 241
Query: 331 ISKHLHNIDKHSFWEVQNGKNIEIWKDNW 359
I KH ++ NG N W DNW
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 122 bits (307), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 125/269 (46%), Gaps = 15/269 (5%)
Query: 100 ISHLLFADDCIIFGRNSLENIHTLKSILKMFCDSSGQMINYSKSNIFYSKNSHPKFKRLI 159
I+HL FADD ++F +I + I F D SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 160 TRTLKVKYASTSEKYLGAQLFIGANKKKVFNDIIDKIKNKLDKWNYNFLSQAGRTIVIST 219
+ + +YLG L + +++KI+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 IAAAVPRYQMQCFALPKGTSKSISTLQKSFWWGRSKGICTK---SWASICTPKKMGGLGI 276
+ ++ + M F LP K I ++ SF W + K +W+ +CTPK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 277 HNTELDNQAMLSKLAWKIKSEPKAIWVQFL------KAKYYNNSEHPNLAKSHHSWHWKN 330
+ + N+ L KL W++ S ++WVQ+L K +++ S + L SW WK
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKK 241
Query: 331 ISKHLHNIDKHSFWEVQNGKNIEIWKDNW 359
I KH ++ NG N W DNW
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 122 bits (305), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 125/269 (46%), Gaps = 15/269 (5%)
Query: 100 ISHLLFADDCIIFGRNSLENIHTLKSILKMFCDSSGQMINYSKSNIFYSKNSHPKFKRLI 159
I+HL FADD ++F +I + I F D SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 160 TRTLKVKYASTSEKYLGAQLFIGANKKKVFNDIIDKIKNKLDKWNYNFLSQAGRTIVIST 219
+ + +YLG L + +++KI+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 IAAAVPRYQMQCFALPKGTSKSISTLQKSFWWGRSKGICTK---SWASICTPKKMGGLGI 276
+ ++ + M F LP K I ++ SF W + K +W+ +CTPK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 277 HNTELDNQAMLSKLAWKIKSEPKAIWVQFL------KAKYYNNSEHPNLAKSHHSWHWKN 330
+ + N+ L KL W++ S ++WVQ+L K +++ S + L SW WK
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKK 241
Query: 331 ISKHLHNIDKHSFWEVQNGKNIEIWKDNW 359
I KH ++ NG N W DNW
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 97.4 bits (241), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 173 KYLGAQLFIGANKKKVFNDIIDKIKNKLDKWNYNFLSQAGRTIVISTIAAAVPRYQMQCF 232
+YLG L + +++KI+ ++ KW LS AGR +IS++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 233 ALPKGTSKSISTLQKSFWWGRSKGICTK---SWASICTPKKMGGLGIHNTELDNQAMLSK 289
LP K I ++ SF W + K +W+ +CTPK GGLGI + + N+ L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 290 LAWKIKSEPKAIWVQFL------KAKYYNNSEHPNLAKSHHSWHWKNISKHLHNIDKHSF 343
L W++ S ++WVQ+L K +++ S + L SW WK I KH
Sbjct: 146 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFVK 200
Query: 344 WEVQNGKNIEIWKDNW 359
++ NG N W DNW
Sbjct: 201 HDIHNGSNTSFWFDNW 216
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 223 AVPRYQMQCFALPKGTSKSISTLQKSFWW---GRSKGICTKSWASICTPKKMGGLGIHNT 279
A+P Y M CF LPK K I ++ FWW +KG+ K+W + K GG+G +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 280 ELDNQAMLSKLAWKIKSEPKAIWVQFLKAKYYNNSEHPNLA-KSHHSWHWKNISKHLHNI 338
E N A+L K W++ S P+++ + K++Y++ S+ N S S+ WK+I +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 339 DKHSFWEVQNGKNIEIWKDNWI 360
+ + V NG++I IW+ W+
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWL 143