BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g1030.1
(172 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 97 9e-24
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 94 2e-22
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 87 2e-20
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 87 2e-20
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 87 2e-20
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 97.4 bits (241), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 26 AVPRYQMQCFALPKGICKSITTLQKSFWW---GKSKGICTKSWSSICLPKYMGGLGIHPP 82
A+P Y M CF LPK +CK I ++ FWW ++KG+ K+W + K GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 83 ELDNQAMLSKLAWRIKSEPESMWVQLLKAKYFVNTDN-PGPAKSHHSWIWKNINKYLNII 141
E N A+L K WR+ S PES+ ++ K++YF +D P S S++WK+I+ I+
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 142 GNYTMWEVHNGKSINIWTDNWIPTLPS 168
V NG+ I IW W+ + P+
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPA 148
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 93.6 bits (231), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 1 MKLDKWNHSFLSQAGRTIVISTIAAAVPRYQMQCFALPKGICKSITTLQKSFWWGKSKGI 60
+++ KW LS AGR +IS++ ++ + M F LP K I ++ SF W +
Sbjct: 105 VRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELN 164
Query: 61 CTKS---WSSICLPKYMGGLGIHPPELDNQAMLSKLAWRIKSEPESMWVQLL------KA 111
K+ WS +C PK GGLGI + N+ L KL WR+ S S+WVQ L K
Sbjct: 165 TKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKG 223
Query: 112 KYFVNTDNPGPAKSHHSWIWKNINKYLNIIGNYTMWEVHNGKSINIWTDNW 162
++ + N + SW+WK I K+ + + ++HNG + + W DNW
Sbjct: 224 SFWSISGN----TTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 87.4 bits (215), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 1 MKLDKWNHSFLSQAGRTIVISTIAAAVPRYQMQCFALPKGICKSITTLQKSFWWGKSKGI 60
+++ KW LS AGR +IS++ ++ + M F LP K I ++ SF W +
Sbjct: 51 VRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELN 110
Query: 61 CTKS---WSSICLPKYMGGLGIHPPELDNQAMLSKLAWRIKSEPESMWVQ------LLKA 111
K+ WS +C PK GGLGI + N+ L KL WR+ S S+WVQ L K
Sbjct: 111 TKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKG 169
Query: 112 KYFVNTDNPGPAKSHHSWIWKNINKYLNIIGNYTMWEVHNGKSINIWTDNW 162
++ + N SW+WK I K+ + + ++HNG + + W DNW
Sbjct: 170 SFWSISGNTTLG----SWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 216
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 87.4 bits (215), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 1 MKLDKWNHSFLSQAGRTIVISTIAAAVPRYQMQCFALPKGICKSITTLQKSFWWGKSKGI 60
+++ KW LS AGR +IS++ ++ + M F LP K I ++ SF W +
Sbjct: 105 VRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELN 164
Query: 61 CTKS---WSSICLPKYMGGLGIHPPELDNQAMLSKLAWRIKSEPESMWVQ------LLKA 111
K+ WS +C PK GGLGI + N+ L KL WR+ S S+WVQ L K
Sbjct: 165 TKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKG 223
Query: 112 KYFVNTDNPGPAKSHHSWIWKNINKYLNIIGNYTMWEVHNGKSINIWTDNW 162
++ + N SW+WK I K+ + + ++HNG + + W DNW
Sbjct: 224 SFWSISGNTTLG----SWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 87.4 bits (215), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 1 MKLDKWNHSFLSQAGRTIVISTIAAAVPRYQMQCFALPKGICKSITTLQKSFWWGKSKGI 60
+++ KW LS AGR +IS++ ++ + M F LP K I ++ SF W +
Sbjct: 105 VRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELN 164
Query: 61 CTKS---WSSICLPKYMGGLGIHPPELDNQAMLSKLAWRIKSEPESMWVQ------LLKA 111
K+ WS +C PK GGLGI + N+ L KL WR+ S S+WVQ L K
Sbjct: 165 TKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKG 223
Query: 112 KYFVNTDNPGPAKSHHSWIWKNINKYLNIIGNYTMWEVHNGKSINIWTDNW 162
++ + N SW+WK I K+ + + ++HNG + + W DNW
Sbjct: 224 SFWSISGNTTLG----SWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270