BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g1240.1
(131 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 4e-14
AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 4e-14
AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORW... 58 1e-10
AT5G51080.3 | RNase H family protein | Chr5:20769022-20770486 RE... 57 1e-10
AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675 RE... 57 2e-10
>AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 67.4 bits (163), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 47/85 (55%)
Query: 28 ATNNEAEYEALIAGLTLAKEMGIQRLDVKSDSQLIVNQLQGTYQARNAKMTAYLAHVKEL 87
ATNN AEY AL+ GL A + G + + V DS L+ Q+QG ++ + KM KEL
Sbjct: 194 ATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKEL 253
Query: 88 QTSFKKMNITQIPRLENGHADALAN 112
SFK +I I R +N AD AN
Sbjct: 254 MNSFKTFDIKHIAREKNSEADKQAN 278
>AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 67.4 bits (163), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 47/85 (55%)
Query: 28 ATNNEAEYEALIAGLTLAKEMGIQRLDVKSDSQLIVNQLQGTYQARNAKMTAYLAHVKEL 87
ATNN AEY AL+ GL A + G + + V DS L+ Q+QG ++ + KM KEL
Sbjct: 194 ATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKEL 253
Query: 88 QTSFKKMNITQIPRLENGHADALAN 112
SFK +I I R +N AD AN
Sbjct: 254 MNSFKTFDIKHIAREKNSEADKQAN 278
>AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORWARD
LENGTH=353 | 201606
Length = 353
Score = 57.8 bits (138), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%)
Query: 5 GLGIALTSPEGDLIQRAIRCAFKATNNEAEYEALIAGLTLAKEMGIQRLDVKSDSQLIVN 64
G L + +G LI R + ATNN AEY ALI GL A E G + + VK DS+L+
Sbjct: 233 GAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVCM 292
Query: 65 QLQGTYQARNAKMTAYLAHVKELQTSFKKMNITQIPRLENGHADALANL 113
Q++G ++ + + K L I+ + R N AD ANL
Sbjct: 293 QIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQANL 341
>AT5G51080.3 | RNase H family protein | Chr5:20769022-20770486
REVERSE LENGTH=259 | 201606
Length = 259
Score = 57.4 bits (137), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 5 GLGIALTSPEGDLIQRAIRCAFKATNNEAEYEALIAGLTLAKEMGIQRLDVKSDSQLIVN 64
G L + +G LI + + ATNN AEY LI GL A E G ++ VK+DS+L+
Sbjct: 139 GAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCM 198
Query: 65 QLQGTYQARNAKMTAYLAHVKELQTSFKKMNITQIPRLENGHADALANL 113
Q++G ++ + ++ K+L I+ + R N AD AN+
Sbjct: 199 QMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQANM 247
>AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675
REVERSE LENGTH=322 | 201606
Length = 322
Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 5 GLGIALTSPEGDLIQRAIRCAFKATNNEAEYEALIAGLTLAKEMGIQRLDVKSDSQLIVN 64
G L + +G LI + + ATNN AEY LI GL A E G ++ VK+DS+L+
Sbjct: 202 GAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCM 261
Query: 65 QLQGTYQARNAKMTAYLAHVKELQTSFKKMNITQIPRLENGHADALANL 113
Q++G ++ + ++ K+L I+ + R N AD AN+
Sbjct: 262 QMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQANM 310