BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0110.1
(1841 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 136 2e-32
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 132 1e-30
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 129 2e-30
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 129 2e-30
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 123 2e-28
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 183/406 (45%), Gaps = 28/406 (6%)
Query: 849 LIIGDLNIIFHSNEKEGGNHLSSTQ-------IHTMTSNILDLGFVEVPYVGSPFTWSNN 901
+++GD + I +++ H S Q + + + D V++P G +TWSN
Sbjct: 222 ILVGDFDQIAATSD-----HYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSN- 275
Query: 902 HQGNSLVQQHLDRALGTQEWFDLYPHSLVTHLQRLGSDHSPILLNTTIPDSQGKKPFRYN 961
HQ ++ + + LDRA+ +WF +P ++ SDHSP ++ + KK FRY
Sbjct: 276 HQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGVSDHSPCIIILENLPKRSKKCFRYF 335
Query: 962 PIWFQDRDFSSIITNHWNTEMAV-SPSIKVHQKLIQLQPILQHWNKYHYNNLQTQISQCS 1020
F +T W ++ V S + + L + + N+ + N+Q + +
Sbjct: 336 SFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEAL 395
Query: 1021 SRLDRCANHI--EYSDLL--------KHLNSLLDQQGRFWKLKSRDNIVSLGDRNTKFFH 1070
L+ + + SD L K N F++ KSR + GD NT+FFH
Sbjct: 396 DSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFH 455
Query: 1071 AMAASRARNNRIKGLQDELGNWVVHNSGMESILFNHFASILTT----IKPPDTPLIAELF 1126
+ + N IK L+ + V + + ++ ++ ++ +L + + P I ++
Sbjct: 456 KVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIH 515
Query: 1127 QPIITDNINQLLTSIPMEEEIEYTVHQLKADKSPGPDGYSPSFFHQNWETVSSDVINMVQ 1186
D + L+++P ++EI V + +K+PGPD ++ FF ++W V I V+
Sbjct: 516 PFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVK 575
Query: 1187 NFFTTKVIAQEINHTHIALIPKTKNPISPSEFRPISLCNSTYKIIS 1232
FF T + + N T I LIPK S FRP+S C YKII+
Sbjct: 576 EFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/441 (25%), Positives = 184/441 (41%), Gaps = 37/441 (8%)
Query: 1388 IISHLFFAGDSLLFLKMDIPSVHHLLDLLNTFGSYSGQLINFNKSGIFFSSNAHNKHCRI 1447
+I+HL FA D L+F S+ +L + F +SG I+ KS I+ + N I
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 1448 V------SRILKVRPINQEDPYLGSNIFIGRKKIKTFLPLLEKLKTKLASWKKNTLSQAG 1501
+ S L VR YLG + + + PL+EK++ ++ W LS AG
Sbjct: 67 LHSFPFASGALPVR-------YLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAG 119
Query: 1502 RGELIRSSLSAAPRYQMSIFNLPCKIKQDIASLQRDFWWGKKPNSNTLYLK-NWNSICKP 1560
R +LI S + + + MS F LP ++I S+ F W P NT K W+ +C P
Sbjct: 120 RLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWS-GPELNTKKAKVAWSDVCTP 178
Query: 1561 KSLGGLGFRNVQLDNISLRSKLNWELRKKQDSTWVKFLQSKYKFQPKGGLNCPSN---AS 1617
K GGLG R+++ N KL W + S WV++L+ Y + + N S
Sbjct: 179 KDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRL-YLLRKGSFWSISGNTTLGS 236
Query: 1618 WVWKNICKNQHLVDSYITWEVGNGSLIDIWFDSWIP-----------GELPLGLPLLHRG 1666
W+WK I K++ L ++ ++ NGS WFD+W G + +G+ L
Sbjct: 237 WMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITL---- 292
Query: 1667 YHKVSQLITTTNSWNQTILIQLFPPSLINKILTIPITGTADTQKWSLSQSGTFSVSSLYK 1726
+ V++ + L +I ++ +T DT +W +G
Sbjct: 293 HASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNT 350
Query: 1727 HLIHNTSVSPDPNTVFWKLLWKLRLHPRIILFLWKLTQNILPINTLLNSYSTTILPLCPM 1786
+ P ++K +W P+ + W +N L + S++ C +
Sbjct: 351 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVL 410
Query: 1787 CKELEETPLHFIQECKYTREL 1807
C L ET H C Y+ E+
Sbjct: 411 CHHLVETRDHLFFTCPYSAEV 431
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 185/445 (41%), Gaps = 37/445 (8%)
Query: 1388 IISHLFFAGDSLLFLKMDIPSVHHLLDLLNTFGSYSGQLINFNKSGIFFSSNAHNKHCRI 1447
+I+HL FA D L+F S+ +L + F +SG I+ KS I+ + N I
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 1448 V------SRILKVRPINQEDPYLGSNIFIGRKKIKTFLPLLEKLKTKLASWKKNTLSQAG 1501
+ S L VR YLG + + + PL+EK++ ++ W LS AG
Sbjct: 67 LHSFPFASGALPVR-------YLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAG 119
Query: 1502 RGELIRSSLSAAPRYQMSIFNLPCKIKQDIASLQRDFWWGKKPNSNTLYLK-NWNSICKP 1560
R +LI S + + + MS F LP ++I S+ F W P NT K W+ +C P
Sbjct: 120 RLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLW-SGPELNTKKAKVAWSDVCTP 178
Query: 1561 KSLGGLGFRNVQLDNISLRSKLNWELRKKQDSTWVKFLQSKYKFQPKGGLNCPSN---AS 1617
K GGLG R+++ N KL W + S WV++L+ Y + + N S
Sbjct: 179 KDEGGLGIRSLKEANKVSLLKLIWRML-SSTSLWVQWLR-LYLLRKGSFWSISGNTTLGS 236
Query: 1618 WVWKNICKNQHLVDSYITWEVGNGSLIDIWFDSWIP-----------GELPLGLPLLHRG 1666
W+WK I K++ L ++ ++ NGS WFD+W G + +G+ L
Sbjct: 237 WMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITL---- 292
Query: 1667 YHKVSQLITTTNSWNQTILIQLFPPSLINKILTIPITGTADTQKWSLSQSGTFSVSSLYK 1726
+ V++ + L +I ++ +T DT +W +G
Sbjct: 293 HASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNT 350
Query: 1727 HLIHNTSVSPDPNTVFWKLLWKLRLHPRIILFLWKLTQNILPINTLLNSYSTTILPLCPM 1786
+ P ++K +W P+ + W +N L + S++ C +
Sbjct: 351 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVL 410
Query: 1787 CKELEETPLHFIQECKYTRELLQKL 1811
C L ET H C Y+ E+ L
Sbjct: 411 CHHLVETRDHLFFTCPYSAEVWSTL 435
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 185/445 (41%), Gaps = 37/445 (8%)
Query: 1388 IISHLFFAGDSLLFLKMDIPSVHHLLDLLNTFGSYSGQLINFNKSGIFFSSNAHNKHCRI 1447
+I+HL FA D L+F S+ +L + F +SG I+ KS I+ + N I
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 1448 V------SRILKVRPINQEDPYLGSNIFIGRKKIKTFLPLLEKLKTKLASWKKNTLSQAG 1501
+ S L VR YLG + + + PL+EK++ ++ W LS AG
Sbjct: 67 LHSFPFASGALPVR-------YLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAG 119
Query: 1502 RGELIRSSLSAAPRYQMSIFNLPCKIKQDIASLQRDFWWGKKPNSNTLYLK-NWNSICKP 1560
R +LI S + + + MS F LP ++I S+ F W P NT K W+ +C P
Sbjct: 120 RLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLW-SGPELNTKKAKVAWSDVCTP 178
Query: 1561 KSLGGLGFRNVQLDNISLRSKLNWELRKKQDSTWVKFLQSKYKFQPKGGLNCPSN---AS 1617
K GGLG R+++ N KL W + S WV++L+ Y + + N S
Sbjct: 179 KDEGGLGIRSLKEANKVSLLKLIWRML-SSTSLWVQWLR-LYLLRKGSFWSISGNTTLGS 236
Query: 1618 WVWKNICKNQHLVDSYITWEVGNGSLIDIWFDSWIP-----------GELPLGLPLLHRG 1666
W+WK I K++ L ++ ++ NGS WFD+W G + +G+ L
Sbjct: 237 WMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITL---- 292
Query: 1667 YHKVSQLITTTNSWNQTILIQLFPPSLINKILTIPITGTADTQKWSLSQSGTFSVSSLYK 1726
+ V++ + L +I ++ +T DT +W +G
Sbjct: 293 HASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNT 350
Query: 1727 HLIHNTSVSPDPNTVFWKLLWKLRLHPRIILFLWKLTQNILPINTLLNSYSTTILPLCPM 1786
+ P ++K +W P+ + W +N L + S++ C +
Sbjct: 351 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVL 410
Query: 1787 CKELEETPLHFIQECKYTRELLQKL 1811
C L ET H C Y+ E+ L
Sbjct: 411 CHHLVETRDHLFFTCPYSAEVWSTL 435
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 123 bits (308), Expect = 2e-28, Method: Composition-based stats.
Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 23/316 (7%)
Query: 1512 AAPRYQMSIFNLPCKIKQDIASLQRDFWWGKKPNSNTLYLKNWNSICKPKSLGGLGFRNV 1571
A P Y M+ F LP + + I S+ DFWW K + ++ K W+ + K+ GG+GF+++
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 1572 QLDNISLRSKLNWELRKKQDSTWVKFLQSKYKFQPKGGLNCP--SNASWVWKNICKNQHL 1629
+ N++L K W + + +S K +S+Y F LN P S S+VWK+I +Q +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRY-FHKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 1630 VDSYITWEVGNGSLIDIWFDSWIPGELPLGLPLLHR----GYHKVSQLITTTN------- 1678
+ VGNG I IW W+ + + R Y VS ++ ++
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGR 180
Query: 1679 SWNQTILIQLFPPSLINKILTIPITG--TADTQKWSLSQSGTFSVSSLYKHLIHNTSVSP 1736
W + ++ LFP I + G D+ W + SG ++V S Y L +
Sbjct: 181 EWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 1737 DPNTV-------FWKLLWKLRLHPRIILFLWKLTQNILPINTLLNSYSTTILPLCPMCKE 1789
P V ++ +WK + P+I FLWK N LP+ L + C C
Sbjct: 241 SPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 1790 LEETPLHFIQECKYTR 1805
+ET H + +C + R
Sbjct: 301 CKETVNHLLFKCTFAR 316