BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000130.1_g0190.1
         (112 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29785.1 | Pol-like polyprotein/retrotransposon | Chr3:116123...    44   1e-06

>AT3G29785.1 | Pol-like polyprotein/retrotransposon |
          Chr3:11612357-11612686 REVERSE LENGTH=109 | 201606
          Length = 109

 Score = 44.3 bits (103), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 1  MIEKFNGKND---FSYWRMQMKNLLISQKLHKTLTGKKPEDMSDEDWEELDLEARATVML 57
          M++  N K D   +S+ RM++++ L  +KLH+ L GKK E MS +DW  L  +    + L
Sbjct: 1  MVQHMNDKVDGTSYSFCRMKIEDYLYGKKLHQPL-GKKVETMSQDDWNILYRQVLDVIRL 59

Query: 58 CLERDVAFLVDGETTTASVWLKLESNFMMKTLTNRVYL 95
           + +++A  V  E +   + +K+ S+   K  TN   +
Sbjct: 60 TISKNIAHNVAKEKSPDGL-MKVLSDIYKKPSTNNTVI 96

Top