BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000130.1_g0200.1
         (377 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    86   4e-20
AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C...    49   3e-06

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 86.3 bits (212), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 3/102 (2%)

Query: 215 GSIKVVKGSLVVMRGTRYGNLYKLLGTTIKGDVAVGISRRDPTTCTKLWHMRLGHMSEKG 274
           G +KV+KG   +++G R+ +LY L G+   G+  +  + +D T   +LWH RL HMS++G
Sbjct: 27  GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDET---RLWHSRLAHMSQRG 83

Query: 275 LSLMCGKGLLKDIKKPCMEFCEHCVVGKAHTVTFSTSKHKSK 316
           + L+  KG L   K   ++FCE C+ GK H V FST +H +K
Sbjct: 84  MELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK 125


>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 12/115 (10%)

Query: 107 VSEDPD---ECFSVTEVSENIYDKWMLDSGASHHMCPNRKWFTTY-RSIDGGIVIMGNDN 162
           ++E PD   ECFS     ENI   W++ S  S+HM P+ K+FTT  RS    +  +  D 
Sbjct: 248 LNEVPDHVAECFSKYTFHENI---WLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDK 304

Query: 163 ICKTV----GLETVRIKMHDGVVRTLTDVRHIPDLRKNLISLGVLERNGCKIIIE 213
              TV    G+  V    ++G  +T+ +V ++P +  N +S+  L+RNG ++ +E
Sbjct: 305 SETTVAMVEGIGDVTFITNEGN-KTIKNVLYVPGIEGNALSVSQLKRNGFEVSME 358

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