BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0230.1
(721 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 179 3e-48
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 123 2e-29
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 123 2e-29
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 119 2e-27
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 100 8e-22
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 179 bits (455), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 158/569 (27%), Positives = 263/569 (46%), Gaps = 81/569 (14%)
Query: 185 AVPRYQMQCFAIPKGISKSIATLQKSFWW---GKSKGICTKAWSYICLPKKLGGLGIHHP 241
A+P Y M CF +PK + K I ++ FWW ++KG+ KAW ++ K GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 242 QLDNEALLSKLAWRLKSDPDAIWVKFLKAKYFPHTDNP--GPSKSHHSWNWKVIRKQYDR 299
+ N ALL K WR+ S P+++ K K++YF H +P P S S+ WK I +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYF-HKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 300 IENHITWEVHSGDKINIWKDNWIPG--------VNHQLPNTYN--SPLTKVSDLINDN-- 347
+ V +G+ I IW+ W+ + P Y S + KVSDLI+++
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGR 180
Query: 348 RWDENILRISFPDHICNLIQAIPIQPLGT---DTMKWNLTQSGNHTVKSMYQHLS----- 399
W ++++ + FP+ LI ++P G D+ W+ T SG++TVKS Y L+
Sbjct: 181 EWRKDVIEMLFPEVERKLIGE--LRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINK 238
Query: 400 -SSTQVTLSKNIN--WNFIWSIPTIPRIQLFIWKICTKALPVRQRIG-KYIGNN---FNC 452
SS Q ++N + IW T P+IQ F+WK + +LPV + +++ C
Sbjct: 239 RSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRC 298
Query: 453 PNCLEIESIEHALLHCPLARNIWFHFNIISTNISSLSEWIMS-----------------W 495
P+C E++ H L C AR W I S I EW S W
Sbjct: 299 PSCK--ETVNHLLFKCTFARLTW---AISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQW 353
Query: 496 QNLDQISCTVDNIHFVTILWHIWKVRCDHCFQQTLYNLNTIL-----DLIKAFPKISNAQ 550
+ Q+ +LW +WK R + F+ +N +L DL + +
Sbjct: 354 EKASQL--------VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAES 405
Query: 551 VQPRPLL----ITKWQPPTYPFIKINVDASFINVNQNIGTSFIVHDYQS--KFICANATI 604
+P + +W+PP + ++K N DA++ N+ G +++ + + K++ A A +
Sbjct: 406 CGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-L 464
Query: 605 TRARNSEESEALAILNSLIWAKNNNYMQVIIESDNINLIKHLNNSRHQVQWQSLV-HIRE 663
+ ++ E+E A+ +++ Y VI ESD+ LI+ LNN W SL I++
Sbjct: 465 PKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQD 521
Query: 664 IRDLTHMLHQVKFSHTRRTVNAQEDKLAK 692
++ L +VKF R N +++A+
Sbjct: 522 LQRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/443 (25%), Positives = 188/443 (42%), Gaps = 43/443 (9%)
Query: 60 LTISHLLFADDCIIFGKNSIDNVHNLKTMLNLFCSASGQTINYNKSNIFYSKNSHPKFKR 119
+ I+HL FADD ++F ++ + + F SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 120 LIMKTLKVKYASTSEKYLGTQLFIGAQKTKVFNSILEQIKCKLSKWHHSFLSQAGRTVIV 179
I+ + + +YLG L T + ++E+I+ ++ KW LS AGR ++
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 180 SAVAAAVPRYQMQCFAIPKGISKSIATLQKSFWWGKSKGICTK---AWSYICLPKKLGGL 236
S+V ++ + M F +P K I ++ SF W + K AWS +C PK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 237 GIHHPQLDNEALLSKLAWRLKSDPDAIWVKFL------KAKYFPHTDNPGPSKSHHSWNW 290
GI + N+ L KL WR+ S ++WV++L K ++ + N + SW W
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNT----TLGSWMW 239
Query: 291 KVIRKQYDRIENHITWEVHSGDKINIWKDNW------IPGVNHQLPNTYNSPL-TKVSDL 343
K I K + ++H+G + W DNW I H+ L V++
Sbjct: 240 KKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEA 299
Query: 344 INDNR----WDENILRISFPDHICNLIQAIPIQPL--GTDTMKWNLTQSGNHTV-KSMYQ 396
+ ++R + +LRI ++I + Q L G DT++W GN + K +
Sbjct: 300 VVNHRPRRHRHDTLLRIE------DVIAEVRHQGLTSGEDTVRWK----GNGDIFKPCFN 349
Query: 397 HLSSSTQVTLSK-NINW-NFIWSIPTIPRIQLFIWKICTKALPVRQRIGKY-IGNNFNCP 453
+ K +NW +W P+ + W L R+ + G + +C
Sbjct: 350 TKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCV 409
Query: 454 NCLE-IESIEHALLHCPLARNIW 475
C +E+ +H CP + +W
Sbjct: 410 LCHHLVETRDHLFFTCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/443 (25%), Positives = 188/443 (42%), Gaps = 43/443 (9%)
Query: 60 LTISHLLFADDCIIFGKNSIDNVHNLKTMLNLFCSASGQTINYNKSNIFYSKNSHPKFKR 119
+ I+HL FADD ++F ++ + + F SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 120 LIMKTLKVKYASTSEKYLGTQLFIGAQKTKVFNSILEQIKCKLSKWHHSFLSQAGRTVIV 179
I+ + + +YLG L T + ++E+I+ ++ KW LS AGR ++
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 180 SAVAAAVPRYQMQCFAIPKGISKSIATLQKSFWWGKSKGICTK---AWSYICLPKKLGGL 236
S+V ++ + M F +P K I ++ SF W + K AWS +C PK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 237 GIHHPQLDNEALLSKLAWRLKSDPDAIWVKFL------KAKYFPHTDNPGPSKSHHSWNW 290
GI + N+ L KL WR+ S ++WV++L K ++ + N + SW W
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNT----TLGSWMW 239
Query: 291 KVIRKQYDRIENHITWEVHSGDKINIWKDNW------IPGVNHQLPNTYNSPL-TKVSDL 343
K I K + ++H+G + W DNW I H+ L V++
Sbjct: 240 KKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEA 299
Query: 344 INDNR----WDENILRISFPDHICNLIQAIPIQPL--GTDTMKWNLTQSGNHTV-KSMYQ 396
+ ++R + +LRI ++I + Q L G DT++W GN + K +
Sbjct: 300 VVNHRPRRHRHDTLLRIE------DVIAEVRHQGLTSGEDTVRWK----GNGDIFKPCFN 349
Query: 397 HLSSSTQVTLSK-NINW-NFIWSIPTIPRIQLFIWKICTKALPVRQRIGKY-IGNNFNCP 453
+ K +NW +W P+ + W L R+ + G + +C
Sbjct: 350 TKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCV 409
Query: 454 NCLE-IESIEHALLHCPLARNIW 475
C +E+ +H CP + +W
Sbjct: 410 LCHHLVETRDHLFFTCPYSAEVW 432
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 186/440 (42%), Gaps = 35/440 (7%)
Query: 60 LTISHLLFADDCIIFGKNSIDNVHNLKTMLNLFCSASGQTINYNKSNIFYSKNSHPKFKR 119
+ I+HL FADD ++F ++ + + F SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 120 LIMKTLKVKYASTSEKYLGTQLFIGAQKTKVFNSILEQIKCKLSKWHHSFLSQAGRTVIV 179
I+ + + +YLG L T + ++E+I+ ++ KW LS AGR ++
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 180 SAVAAAVPRYQMQCFAIPKGISKSIATLQKSFWWGKSKGICTK---AWSYICLPKKLGGL 236
S+V ++ + M F +P K I ++ SF W + K AWS +C PK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 237 GIHHPQLDNEALLSKLAWRLKSDPDAIWVKFLKAKYFPHTD--NPGPSKSHHSWNWKVIR 294
GI + N+ L KL WR+ S ++WV++L+ + + + SW WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 295 KQYDRIENHITWEVHSGDKINIWKDNW------IPGVNHQLPNTYNSPL-TKVSDLINDN 347
K + ++H+G + W DNW I H+ L V++ + ++
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 348 R----WDENILRISFPDHICNLIQAIPIQPL--GTDTMKWNLTQSGNHTV-KSMYQHLSS 400
R + +LRI ++I + Q L G DT++W GN + K + +
Sbjct: 304 RPRRHRHDTLLRIE------DVIAEVRHQGLTSGEDTVRWK----GNGDIFKPCFNTKET 353
Query: 401 STQVTLSK-NINW-NFIWSIPTIPRIQLFIWKICTKALPVRQRIGKY-IGNNFNCPNCLE 457
K +NW +W P+ + W L R+ + G + +C C
Sbjct: 354 WAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHH 413
Query: 458 -IESIEHALLHCPLARNIWF 476
+E+ +H CP + + F
Sbjct: 414 LVETRDHLFFTCPYSAEVPF 433
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 158/366 (43%), Gaps = 38/366 (10%)
Query: 135 KYLGTQLFIGAQKTKVFNSILEQIKCKLSKWHHSFLSQAGRTVIVSAVAAAVPRYQMQCF 194
+YLG L T + ++E+I+ ++ KW LS AGR ++S+V ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 195 AIPKGISKSIATLQKSFWWGKSKGICTK---AWSYICLPKKLGGLGIHHPQLDNEALLSK 251
+P K I ++ SF W + K AWS +C PK GGLGI + N+ L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 252 LAWRLKSDPDAIWVKFL------KAKYFPHTDNPGPSKSHHSWNWKVIRKQYDRIENHIT 305
L WR+ S ++WV++L K ++ + N + SW WK I K +
Sbjct: 146 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNT----TLGSWMWKKILKHRALASGFVK 200
Query: 306 WEVHSGDKINIWKDNW------IPGVNHQLPNTYNSPL-TKVSDLINDNR----WDENIL 354
++H+G + W DNW I H+ L V++ + ++R + +L
Sbjct: 201 HDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLL 260
Query: 355 RISFPDHICNLIQAIPIQPL--GTDTMKWNLTQSGNHTVKSMYQHLSSSTQVTLSKNINW 412
RI ++I + Q L G DT++W + + +++ + L +NW
Sbjct: 261 RIE------DVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKL--KVNW 312
Query: 413 -NFIWSIPTIPRIQLFIWKICTKALPVRQRIGKY-IGNNFNCPNCLE-IESIEHALLHCP 469
+W P+ + W L R+ + G + +C C +E+ +H CP
Sbjct: 313 YKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCP 372
Query: 470 LARNIW 475
+ +W
Sbjct: 373 YSAEVW 378