BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0300.1
(1475 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 437 e-132
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 437 e-132
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 229 5e-68
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 121 3e-31
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 85 4e-19
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 437 bits (1125), Expect = e-132, Method: Compositional matrix adjust.
Identities = 216/483 (44%), Positives = 312/483 (64%), Gaps = 10/483 (2%)
Query: 944 AFLSILELPTEPTNYKEASKHHEWVKAMHEEFSALQDNETWSL--VPSNDKMNILGCKWV 1001
+FL + EP+ Y EA + W AM +E A++ TW + +P N K +GCKWV
Sbjct: 75 SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKP--IGCKWV 132
Query: 1002 FKLKQKSDGTIERYKARLVAKGFHQQEGVDYEETFSPVVKSNTIRLVLSIAVSRTWQIKQ 1061
+K+K SDGTIERYKARLVAKG+ QQEG+D+ ETFSPV K +++L+L+I+ + + Q
Sbjct: 133 YKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQ 192
Query: 1062 LDVSNAFLHGTLDEAVYMVQPPGFVQKGKET----HVCHLQKALYGLKQAPRARFNKFAT 1117
LD+SNAFL+G LDE +YM PPG+ + ++ VC+L+K++YGLKQA R F KF+
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252
Query: 1118 FLYEYGFQKSRSDQSMFVMHSNSEIMVLLLYVDDIILTGSSNIHISNLITDLSRQFKMKD 1177
L +GF +S SD + F+ + + + +L+YVDDII+ +++ + L + L FK++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312
Query: 1178 LGLLSYFLGIEVTYDKQSSSMMLTQNKYTLQLIKKAGLLNSKPSKLPVSSGQRVSIHNGE 1237
LG L YFLG+E+ + ++ + + Q KY L L+ + GLL KPS +P+ S H+G
Sbjct: 313 LGPLKYFLGLEIA--RSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGG 370
Query: 1238 ILSNPTEYRSLVGAIQYLTLTRPDISFAVNYTAQFMHSPTSTHLILVKKILRYLKGSVGS 1297
+ YR L+G + YL +TR DISFAVN +QF +P H V KIL Y+KG+VG
Sbjct: 371 DFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQ 430
Query: 1298 GVRLSPSDLTTITAFSDSDWAGCPDSKKCTAGYCVFLGSNIISWSSKKQATVAKSSTEAE 1357
G+ S + FSD+ + C D+++ T GYC+FLG+++ISW SKKQ V+KSS EAE
Sbjct: 431 GLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAE 490
Query: 1358 YKALSTMATEVVWISYLMAELRFPLQKPFKLYCDNISAKYLASNPVFHARTKHIEVDFHY 1417
Y+ALS E++W++ EL+ PL KP L+CDN +A ++A+N VFH RTKHIE D H
Sbjct: 491 YRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHS 550
Query: 1418 VRD 1420
VR+
Sbjct: 551 VRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 437 bits (1125), Expect = e-132, Method: Compositional matrix adjust.
Identities = 216/483 (44%), Positives = 312/483 (64%), Gaps = 10/483 (2%)
Query: 944 AFLSILELPTEPTNYKEASKHHEWVKAMHEEFSALQDNETWSL--VPSNDKMNILGCKWV 1001
+FL + EP+ Y EA + W AM +E A++ TW + +P N K +GCKWV
Sbjct: 75 SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKP--IGCKWV 132
Query: 1002 FKLKQKSDGTIERYKARLVAKGFHQQEGVDYEETFSPVVKSNTIRLVLSIAVSRTWQIKQ 1061
+K+K SDGTIERYKARLVAKG+ QQEG+D+ ETFSPV K +++L+L+I+ + + Q
Sbjct: 133 YKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQ 192
Query: 1062 LDVSNAFLHGTLDEAVYMVQPPGFVQKGKET----HVCHLQKALYGLKQAPRARFNKFAT 1117
LD+SNAFL+G LDE +YM PPG+ + ++ VC+L+K++YGLKQA R F KF+
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252
Query: 1118 FLYEYGFQKSRSDQSMFVMHSNSEIMVLLLYVDDIILTGSSNIHISNLITDLSRQFKMKD 1177
L +GF +S SD + F+ + + + +L+YVDDII+ +++ + L + L FK++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312
Query: 1178 LGLLSYFLGIEVTYDKQSSSMMLTQNKYTLQLIKKAGLLNSKPSKLPVSSGQRVSIHNGE 1237
LG L YFLG+E+ + ++ + + Q KY L L+ + GLL KPS +P+ S H+G
Sbjct: 313 LGPLKYFLGLEIA--RSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGG 370
Query: 1238 ILSNPTEYRSLVGAIQYLTLTRPDISFAVNYTAQFMHSPTSTHLILVKKILRYLKGSVGS 1297
+ YR L+G + YL +TR DISFAVN +QF +P H V KIL Y+KG+VG
Sbjct: 371 DFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQ 430
Query: 1298 GVRLSPSDLTTITAFSDSDWAGCPDSKKCTAGYCVFLGSNIISWSSKKQATVAKSSTEAE 1357
G+ S + FSD+ + C D+++ T GYC+FLG+++ISW SKKQ V+KSS EAE
Sbjct: 431 GLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAE 490
Query: 1358 YKALSTMATEVVWISYLMAELRFPLQKPFKLYCDNISAKYLASNPVFHARTKHIEVDFHY 1417
Y+ALS E++W++ EL+ PL KP L+CDN +A ++A+N VFH RTKHIE D H
Sbjct: 491 YRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHS 550
Query: 1418 VRD 1420
VR+
Sbjct: 551 VRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 229 bits (584), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 156/230 (67%), Gaps = 3/230 (1%)
Query: 1143 MVLLLYVDDIILTGSSNIHISNLITDLSRQFKMKDLGLLSYFLGIEVTYDKQSSSMMLTQ 1202
M LLLYVDDI+LTGSSN ++ LI LS F MKDLG + YFLGI++ S + L+Q
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQI--KTHPSGLFLSQ 58
Query: 1203 NKYTLQLIKKAGLLNSKPSKLPVSSGQRVSIHNGEILSNPTEYRSLVGAIQYLTLTRPDI 1262
KY Q++ AG+L+ KP P+ S+ + +P+++RS+VGA+QYLTLTRPDI
Sbjct: 59 TKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKY-PDPSDFRSIVGALQYLTLTRPDI 117
Query: 1263 SFAVNYTAQFMHSPTSTHLILVKKILRYLKGSVGSGVRLSPSDLTTITAFSDSDWAGCPD 1322
S+AVN Q MH PT L+K++LRY+KG++ G+ + + + AF DSDWAGC
Sbjct: 118 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 177
Query: 1323 SKKCTAGYCVFLGSNIISWSSKKQATVAKSSTEAEYKALSTMATEVVWIS 1372
+++ T G+C FLG NIISWS+K+Q TV++SSTE EY+AL+ A E+ W S
Sbjct: 178 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 121 bits (304), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 71/99 (71%)
Query: 954 EPTNYKEASKHHEWVKAMHEEFSALQDNETWSLVPSNDKMNILGCKWVFKLKQKSDGTIE 1013
EP + A K W +AM EE AL N+TW LVP NILGCKWVFK K SDGT++
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 1014 RYKARLVAKGFHQQEGVDYEETFSPVVKSNTIRLVLSIA 1052
R KARLVAKGFHQ+EG+ + ET+SPVV++ TIR +L++A
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 84.7 bits (208), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 53/78 (67%)
Query: 1254 YLTLTRPDISFAVNYTAQFMHSPTSTHLILVKKILRYLKGSVGSGVRLSPSDLTTITAFS 1313
YLT+TRPD++FAVN +QF + + + V K+L Y+KG+VG G+ S + + AF+
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 1314 DSDWAGCPDSKKCTAGYC 1331
DSDWA CPD+++ G+C
Sbjct: 62 DSDWASCPDTRRSVTGFC 79