BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0410.1
(626 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 152 3e-39
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 114 2e-26
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 114 2e-26
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 107 8e-24
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 102 9e-23
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 152 bits (385), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 141/559 (25%), Positives = 241/559 (43%), Gaps = 45/559 (8%)
Query: 100 TYPFSFQKIPKAIVNRLEREERSFWWGHELENHKMHFIKWSIICSSKKNGGLGVRSLIEV 159
TY + +PK + ++ FWW ++ E MH+ W + K GG+G + +
Sbjct: 5 TYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAF 64
Query: 160 NDSLLAKMVRRFITNQDAMWVKILRAKYIHKEDFWNTNCKQRQSPLWKSILQVREVLKDH 219
N +LL K + R ++ +++ K+ +++Y HK D N R S +WKSI +E+L+
Sbjct: 65 NLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQG 124
Query: 220 IVWQIGSGKDVPILD-PWLPETNTHKPTLIQPLP-------NSINRVVDLIDPITNQWDQ 271
+G+G+D+ I WL +Q +P +SI +V DLID +W +
Sbjct: 125 ARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRK 184
Query: 272 NILHQYFHQDTIQAINNLYITHHQQRDNLIWMGTSNGKFSSKSFYSTI------KEGPTL 325
+++ F + + I L + D+ W TS+G ++ KS Y + + P
Sbjct: 185 DVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQE 244
Query: 326 SDYLSSFP-WTKFWQKKYMNPKIQLFIWKLLHEGLATLSNIGSRITNINQGCKMCNSQEA 384
S P + K W K +PKIQ F+WK L L + R + C C S +
Sbjct: 245 VSEPSLNPIYQKIW-KSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK- 302
Query: 385 ESHQHLFGMCPCLRSLISLTNN--------HELMHLDTDLVENLKNLLNKGEEANEVWYL 436
E+ HL C R ++++ + ++++ V NL N + E+A++ L
Sbjct: 303 ETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ---L 359
Query: 437 YTYLLWQWWKHRNEVHFKNKVIDLPRLWWLTKME-------LHKNHYISSLLPNNNNLQV 489
+LLW+ WK+RNE+ F+ + + + L + E + P N
Sbjct: 360 VPWLLWRLWKNRNELVFRGREFNAQEV--LRRAEDDLEEWRIRTEAESCGTKPQVNRSSC 417
Query: 490 NQWEPPAQGPIKVNVDGAYRV--EGGAAAAVMKNHEGEIMEARTVRFPPIYP-LHSEMGA 546
+W PP +K N D + E V++N +GE+ P + L +E+ A
Sbjct: 418 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEA 477
Query: 547 FRLGLEMAQDSNLLGVQIEGDSRVMVTLLSDGNAEIPWRFLNDVIQ--LRVLVREIHANV 604
R + V E DS+V++ +L+ N EI W L IQ R+L +
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIEILN--NDEI-WPSLKPTIQDLQRLLSQFTEVKF 534
Query: 605 SYCNRISNSAPHNLAYEEL 623
+ R N+ +A E L
Sbjct: 535 VFIPREGNTLAERVARESL 553
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 117/467 (25%), Positives = 195/467 (41%), Gaps = 35/467 (7%)
Query: 1 MSEYADFSGQAVNFDKSSIFFGSGVPPPIQSQFMDLLKAPIMNSQDKYLGSLILKKSNRV 60
++ADFSG ++ +KS+I+ +GV ++ + +YLG +L K
Sbjct: 35 FGKFADFSGLQISLEKSTIYM-AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTT 93
Query: 61 DSHTWLVDKFRKSLAGWKQGLISQAGKTVLLKSVLGSYCTYPFSFQKIPKAIVNRLEREE 120
+ LV+K R + W +S AG+ L+ SV+ S + S ++P A + ++
Sbjct: 94 SDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSIC 153
Query: 121 RSFWWGHELENHKMHFIKWSIICSSKKNGGLGVRSLIEVNDSLLAKMVRRFITNQDAMWV 180
SF W N K + WS +C+ K GGLG+RSL E N L K++ R +++ ++WV
Sbjct: 154 SSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWV 212
Query: 181 KILRAKYIHKEDFWNTNCKQR-QSPLWKSILQVREVLKDHIVWQIGSGKDVPI-LDPW-- 236
+ LR + K FW+ + S +WK IL+ R + + I +G + D W
Sbjct: 213 QWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 272
Query: 237 ---LPETNTHKPTLIQPLPNSINRVVDLIDPITNQWDQNILHQYFH--QDTIQAINNLYI 291
L + H+ + I + + + N + H +D I + + +
Sbjct: 273 IGRLIDVTGHRGC----IDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGL 328
Query: 292 THHQQRDNLIWMGTSNGK-----FSSKSFYSTIKEGPTLSDYLSSFPWTKFWQKKYMNPK 346
T + D + W G NG F++K ++ +E P L W K + PK
Sbjct: 329 TSGE--DTVRWKG--NGDIFKPCFNTKETWAATRE-PKL-----KVNWYKGVWFSHATPK 378
Query: 347 IQLFIWKLLHEGLATLSNIGSRITNINQGCKMCNSQEAESHQHLFGMCPCLRSLISLTNN 406
+ W + L T + S + C +C+ E+ HLF CP + S
Sbjct: 379 YSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH-HLVETRDHLFFTCPYSAEVWSTLTR 437
Query: 407 HELMHLDTDLVENLKNLLNKGEEANEVWYLYTY----LLWQWWKHRN 449
L T+ E + LL +EV +L Y L WK RN
Sbjct: 438 KLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYTFQLTLHSLWKERN 484
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 117/467 (25%), Positives = 195/467 (41%), Gaps = 35/467 (7%)
Query: 1 MSEYADFSGQAVNFDKSSIFFGSGVPPPIQSQFMDLLKAPIMNSQDKYLGSLILKKSNRV 60
++ADFSG ++ +KS+I+ +GV ++ + +YLG +L K
Sbjct: 35 FGKFADFSGLQISLEKSTIYM-AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTT 93
Query: 61 DSHTWLVDKFRKSLAGWKQGLISQAGKTVLLKSVLGSYCTYPFSFQKIPKAIVNRLEREE 120
+ LV+K R + W +S AG+ L+ SV+ S + S ++P A + ++
Sbjct: 94 SDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSIC 153
Query: 121 RSFWWGHELENHKMHFIKWSIICSSKKNGGLGVRSLIEVNDSLLAKMVRRFITNQDAMWV 180
SF W N K + WS +C+ K GGLG+RSL E N L K++ R +++ ++WV
Sbjct: 154 SSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWV 212
Query: 181 KILRAKYIHKEDFWNTNCKQR-QSPLWKSILQVREVLKDHIVWQIGSGKDVPI-LDPW-- 236
+ LR + K FW+ + S +WK IL+ R + + I +G + D W
Sbjct: 213 QWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 272
Query: 237 ---LPETNTHKPTLIQPLPNSINRVVDLIDPITNQWDQNILHQYFH--QDTIQAINNLYI 291
L + H+ + I + + + N + H +D I + + +
Sbjct: 273 IGRLIDVTGHRGC----IDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGL 328
Query: 292 THHQQRDNLIWMGTSNGK-----FSSKSFYSTIKEGPTLSDYLSSFPWTKFWQKKYMNPK 346
T + D + W G NG F++K ++ +E P L W K + PK
Sbjct: 329 TSGE--DTVRWKG--NGDIFKPCFNTKETWAATRE-PKL-----KVNWYKGVWFSHATPK 378
Query: 347 IQLFIWKLLHEGLATLSNIGSRITNINQGCKMCNSQEAESHQHLFGMCPCLRSLISLTNN 406
+ W + L T + S + C +C+ E+ HLF CP + S
Sbjct: 379 YSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH-HLVETRDHLFFTCPYSAEVWSTLTR 437
Query: 407 HELMHLDTDLVENLKNLLNKGEEANEVWYLYTY----LLWQWWKHRN 449
L T+ E + LL +EV +L Y L WK RN
Sbjct: 438 KLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYTFQLTLHSLWKERN 484
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 178/413 (43%), Gaps = 39/413 (9%)
Query: 1 MSEYADFSGQAVNFDKSSIFFGSGVPPPIQSQFMDLLKAPIMNSQDKYLGSLILKKSNRV 60
++ADFSG ++ +KS+I+ +GV ++ + +YLG +L K
Sbjct: 35 FGKFADFSGLQISLEKSTIYM-AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTT 93
Query: 61 DSHTWLVDKFRKSLAGWKQGLISQAGKTVLLKSVLGSYCTYPFSFQKIPKAIVNRLEREE 120
+ LV+K R + W +S AG+ L+ SV+ S + S ++P A + ++
Sbjct: 94 SDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSIC 153
Query: 121 RSFWWGHELENHKMHFIKWSIICSSKKNGGLGVRSLIEVNDSLLAKMVRRFITNQDAMWV 180
SF W N K + WS +C+ K GGLG+RSL E N L K++ R +++ ++WV
Sbjct: 154 SSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWV 212
Query: 181 KILRAKYIHKEDFWNTNCKQR-QSPLWKSILQVREVLKDHIVWQIGSGKDVPI-LDPW-- 236
+ LR + K FW+ + S +WK IL+ R + + I +G + D W
Sbjct: 213 QWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 272
Query: 237 ---LPETNTHKPTLIQPLPNSINRVVDLIDPITNQWDQNILHQYFH--QDTIQAINNLYI 291
L + H+ + I + + + N + H +D I + + +
Sbjct: 273 IGRLIDVTGHRGC----IDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGL 328
Query: 292 THHQQRDNLIWMGTSNGK-----FSSKSFYSTIKEGPTLSDYLSSFPWTKFWQKKYMNPK 346
T + D + W G NG F++K ++ +E P L W K + PK
Sbjct: 329 TSGE--DTVRWKG--NGDIFKPCFNTKETWAATRE-PKL-----KVNWYKGVWFSHATPK 378
Query: 347 IQLFIWKLLHEGLATLSNIGSRITNINQG----CKMCNSQEAESHQHLFGMCP 395
+ W + L T G R+ + N G C +C+ E+ HLF CP
Sbjct: 379 YSVLAWIAIKNRLTT----GDRMLSWNAGADSSCVLCH-HLVETRDHLFFTCP 426
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 102 bits (254), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 174/421 (41%), Gaps = 34/421 (8%)
Query: 47 KYLGSLILKKSNRVDSHTWLVDKFRKSLAGWKQGLISQAGKTVLLKSVLGSYCTYPFSFQ 106
+YLG +L K + LV+K R + W +S AG+ L+ SV+ S + S
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 107 KIPKAIVNRLEREERSFWWGHELENHKMHFIKWSIICSSKKNGGLGVRSLIEVNDSLLAK 166
++P A + ++ SF W N K + WS +C+ K GGLG+RSL E N L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 167 MVRRFITNQDAMWVKILRAKYIHKEDFWNTNCKQR-QSPLWKSILQVREVLKDHIVWQIG 225
++ R +++ ++WV+ LR + K FW+ + S +WK IL+ R + + I
Sbjct: 146 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 204
Query: 226 SGKDVPI-LDPW-----LPETNTHKPTLIQPLPNSINRVVDLIDPITNQWDQNILHQYFH 279
+G + D W L + H+ + I + + + N + H
Sbjct: 205 NGSNTSFWFDNWSKIGRLIDVTGHRGC----IDMGITLHASVAEAVVNHRPRRHRHDTLL 260
Query: 280 --QDTIQAINNLYITHHQQRDNLIWMGTSNGK-----FSSKSFYSTIKEGPTLSDYLSSF 332
+D I + + +T + D + W G NG F++K ++ +E P L
Sbjct: 261 RIEDVIAEVRHQGLTSGE--DTVRWKG--NGDIFKPCFNTKETWAATRE-PKL-----KV 310
Query: 333 PWTKFWQKKYMNPKIQLFIWKLLHEGLATLSNIGSRITNINQGCKMCNSQEAESHQHLFG 392
W K + PK + W + L T + S + C +C+ E+ HLF
Sbjct: 311 NWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH-HLVETRDHLFF 369
Query: 393 MCPCLRSLISLTNNHELMHLDTDLVENLKNLLNKGEEANEVWYLYTY----LLWQWWKHR 448
CP + S L T+ E + LL +EV +L Y L WK R
Sbjct: 370 TCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYTFQLTLHSLWKER 429
Query: 449 N 449
N
Sbjct: 430 N 430