BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000130.1_g0530.1
         (162 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60650.1 | transmembrane protein | Chr3:22419351-22420274 FOR...    45   2e-06

>AT3G60650.1 | transmembrane protein | Chr3:22419351-22420274
           FORWARD LENGTH=143 | 201606
          Length = 143

 Score = 45.4 bits (106), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 40/164 (24%)

Query: 5   IVSTLLLLLLLCHAMKGSSGRHLGMGKERHKHHFHHSSKDVANKAVMDDISKEKPYLVKE 64
           IV  +L   LLC        RHLG          H   K   N   +D ++K+   + K 
Sbjct: 14  IVFVILSWSLLC------DSRHLG----------HMEKKLSVN---LDLLNKDNEEITKL 54

Query: 65  NNPKRKHQKATRSSNNGRAVVNDNSFDNGPISADHQEQIKHPDVMLKEDHKRVQMIQGAL 124
             P     K     +   AVVN    DNG I+    ++I            RV+      
Sbjct: 55  EAPST--NKTNTLLSQSHAVVNHG--DNGQINGKKTKEIH-----------RVKRASDKK 99

Query: 125 QTKSLVSVSWRIPQ------KKHKEEPGFNLDYSPPKIHPPSHN 162
            +   VS +W+IP+      K  +E PGFNLDY  P  HPP HN
Sbjct: 100 VSSKRVSRTWKIPKYPKKQPKSDQEHPGFNLDYMQPTTHPPHHN 143


Top