BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0530.1
(162 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G60650.1 | transmembrane protein | Chr3:22419351-22420274 FOR... 45 2e-06
>AT3G60650.1 | transmembrane protein | Chr3:22419351-22420274
FORWARD LENGTH=143 | 201606
Length = 143
Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 40/164 (24%)
Query: 5 IVSTLLLLLLLCHAMKGSSGRHLGMGKERHKHHFHHSSKDVANKAVMDDISKEKPYLVKE 64
IV +L LLC RHLG H K N +D ++K+ + K
Sbjct: 14 IVFVILSWSLLC------DSRHLG----------HMEKKLSVN---LDLLNKDNEEITKL 54
Query: 65 NNPKRKHQKATRSSNNGRAVVNDNSFDNGPISADHQEQIKHPDVMLKEDHKRVQMIQGAL 124
P K + AVVN DNG I+ ++I RV+
Sbjct: 55 EAPST--NKTNTLLSQSHAVVNHG--DNGQINGKKTKEIH-----------RVKRASDKK 99
Query: 125 QTKSLVSVSWRIPQ------KKHKEEPGFNLDYSPPKIHPPSHN 162
+ VS +W+IP+ K +E PGFNLDY P HPP HN
Sbjct: 100 VSSKRVSRTWKIPKYPKKQPKSDQEHPGFNLDYMQPTTHPPHHN 143