BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0570.1
(161 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 63 5e-12
AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 59 5e-11
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 57 4e-10
AT2G33160.1 | glycoside hydrolase family 28 protein / polygalact... 56 1e-09
AT4G09775.1 | non-LTR retroelement reverse transcriptase | Chr4:... 51 1e-08
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 63.2 bits (152), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 16/151 (10%)
Query: 14 ILWFLWKARCEKCFTTNKQNPLQIIERI--------INTSTTPLSTEPSIIKKCKEKTNT 65
+LW LWK R E F + N +++ R I T T+P + +++
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQV-----NRSSC 417
Query: 66 QTWRPPSTPYIKINVEASFVSLNEQAGIGYIIRD--AEANYIIAVADIARGQHAEECESL 123
WRPP ++K N +A++ NE+ GIG+++R+ E ++ A A + + + E E
Sbjct: 418 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLEAELE 476
Query: 124 AILSSLKDALQLQIQYVHLESDNQAIILALN 154
A+ ++ + Q YV ESD+Q +I LN
Sbjct: 477 AMRWAVLSLSRFQYNYVIFESDSQVLIEILN 507
>AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:9706657-9707298 REVERSE
LENGTH=213 | 201606
Length = 213
Score = 58.9 bits (141), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 34 PLQIIERIINTSTTPLSTEPSII------KKCKEKTNTQTWRPPSTPYIKINVEASFVSL 87
P +I R+ T + ++ + +E+ N WR P +IK N + SFV+
Sbjct: 12 PWEITLRLAQTDAHEYTEANTVAQINTRSRGVREEDNHDRWRRPERGWIKCNFDGSFVNG 71
Query: 88 NEQAGIGYIIRDAEANYIIAVADIARG-QHAEECESLAILSSLKDALQLQIQYVHLESDN 146
+ ++ G+++RD+ +Y++A I R +A E E A++ S++ + V E DN
Sbjct: 72 DVKSKAGWVVRDSNGSYLLAGQAIGRKVDNALESEIQALIISMQHCWSHGYKRVCFEGDN 131
Query: 147 QAIILALNGKGV 158
+ + +NG V
Sbjct: 132 KMLFDLINGSKV 143
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 57.0 bits (136), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 5/156 (3%)
Query: 9 YQPFKILWFLWKARCEKCFTTNKQNPLQIIERIINTS----TTPLSTEPSIIKKCKEKTN 64
+ PF ++W +WK+ + F + +E +N + ++ E + + +
Sbjct: 42 FMPFWLMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSR 101
Query: 65 TQTWRPPSTPYIKINVEASFVSLNEQAGIGYIIRDAEANYIIAVADIARGQH-AEECESL 123
W PP +K N +AS N +G+G+I+R+++ I +G+ EE E
Sbjct: 102 NTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECS 161
Query: 124 AILSSLKDALQLQIQYVHLESDNQAIILALNGKGVN 159
++ +++ + + V E DNQ I +N K N
Sbjct: 162 TLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSN 197
>AT2G33160.1 | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
Chr2:14053404-14056246 FORWARD LENGTH=664 | 201606
Length = 664
Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 5 RRRNYQPFKILWFLWKARCEKCFTTNK---QNPLQIIERII---NTSTTP--LSTEPSII 56
+R + P ILW LW +R F + LQ+ + + N + TP +++ + I
Sbjct: 437 QRFHQLPLWILWRLWNSRNILYFQRRHVPWETTLQLAQMDLQEWNEAVTPSHINSHGTTI 496
Query: 57 KKCKEKTNTQTWRPPSTPYIKINVEASFVSLNEQAGIGYIIRDAEANYIIAVADIARG-Q 115
+ ++ WR P+ ++K NV+ SF++ N G+I+RD Y A I
Sbjct: 497 R-----SHIPNWRRPTNGWVKCNVDGSFINGNIPGKGGWIVRDHNGRYEFAGQAIGNCID 551
Query: 116 HAEECESLAILSSLKDALQLQIQYVHLESDNQAIILALNG 155
+A ECE A+L +++ + + E DN+ + +NG
Sbjct: 552 NALECEFQALLMAMQHCWSKGYRRICFEGDNKEMFDLING 591
>AT4G09775.1 | non-LTR retroelement reverse transcriptase |
Chr4:6156629-6157054 FORWARD LENGTH=141 | 201606
Length = 141
Score = 51.2 bits (121), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 15 LWFLWKARCEKCFTTNKQNPLQI-----------IERIINTSTTPLSTEPSIIKKCKEKT 63
+W LWK+R E F + P ++ +E IN + STE +
Sbjct: 1 MWRLWKSRNEFLFQQIDRFPWKVAQKGEQEATEWVETTINDTANSHSTEQP---NDRPSG 57
Query: 64 NTQTWRPPSTPYIKINVEASFVSLNEQAGIGYIIRDAEANYI-IAVADIARGQHAEECES 122
++ W PP Y+K N ++ +V + +IIRD+ + I A + + A + E+
Sbjct: 58 RSKEWSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSNGHVIHSGCAKLQQSYSALQAEA 117
Query: 123 LAILSSLKDALQLQIQYVHLESDN 146
L L +L+ +YV E +N
Sbjct: 118 LGFLHALQMVWIRGYRYVWFEGEN 141