BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0610.1
(265 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 65 2e-11
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 65 2e-11
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 51 1e-07
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 25/129 (19%)
Query: 162 EVTVRRTSRQTRLPNRLNDY------EVQLNECT----------ITSCFMLEDTFDNEPT 205
E +V + R+TR P L DY + +++ + + F++ EP+
Sbjct: 28 EPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPS 87
Query: 206 SYREAQGNVDWEGAMKDEIAALKKNSTWDLITY---------KWFYKLKKAADGTIIKHK 256
+Y EA+ + W GAM DEI A++ TW++ T KW YK+K +DGTI ++K
Sbjct: 88 TYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYK 147
Query: 257 AHLVARGFS 265
A LVA+G++
Sbjct: 148 ARLVAKGYT 156
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 25/129 (19%)
Query: 162 EVTVRRTSRQTRLPNRLNDY------EVQLNECT----------ITSCFMLEDTFDNEPT 205
E +V + R+TR P L DY + +++ + + F++ EP+
Sbjct: 28 EPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPS 87
Query: 206 SYREAQGNVDWEGAMKDEIAALKKNSTWDLITY---------KWFYKLKKAADGTIIKHK 256
+Y EA+ + W GAM DEI A++ TW++ T KW YK+K +DGTI ++K
Sbjct: 88 TYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYK 147
Query: 257 AHLVARGFS 265
A LVA+G++
Sbjct: 148 ARLVAKGYT 156
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 196 LEDTFDNEPTSYREAQGNVDWEGAMKDEIAALKKNSTW---------DLITYKWFYKLKK 246
+ T EP S A + W AM++E+ AL +N TW +++ KW +K K
Sbjct: 20 ITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKL 79
Query: 247 AADGTIIKHKAHLVARGF 264
+DGT+ + KA LVA+GF
Sbjct: 80 HSDGTLDRLKARLVAKGF 97