BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0670.1
(89 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18140.1 | Transducin/WD40 repeat-like superfamily protein | ... 112 2e-31
AT2G22040.1 | Transducin/WD40 repeat-like superfamily protein | ... 101 2e-27
AT3G18140.2 | Transducin/WD40 repeat-like superfamily protein | ... 94 2e-25
>AT3G18140.1 | Transducin/WD40 repeat-like superfamily protein |
Chr3:6212743-6214567 REVERSE LENGTH=305 | 201606
Length = 305
Score = 112 bits (279), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/80 (72%), Positives = 64/80 (80%), Gaps = 6/80 (7%)
Query: 12 NTTVRSWTVMWDGSLVVAANNHGTCYIWRLLGGTQ--TNFEPRHKLQAHNGYILKYLLSP 69
+T VRS TVMWDG++VVAANN GTCY+WRLL G Q T FEP HKLQAHNG+ILK LLSP
Sbjct: 162 DTAVRSLTVMWDGTMVVAANNRGTCYVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSP 221
Query: 70 EFREPNRYLATASSDHTVKI 89
N+YLATASSD TVKI
Sbjct: 222 ----ANKYLATASSDKTVKI 237
>AT2G22040.1 | Transducin/WD40 repeat-like superfamily protein |
Chr2:9374576-9376260 REVERSE LENGTH=313 | 201606
Length = 313
Score = 101 bits (251), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 60/79 (75%), Gaps = 5/79 (6%)
Query: 13 TTVRSWTVMWDGSLVVAANNHGTCYIWRLLGGTQ--TNFEPRHKLQAHNGYILKYLLSPE 70
T +RS TVMWDG++VVAAN+ GTCY+WR L Q T FEP HKLQAHN +ILK LLSP
Sbjct: 169 TPIRSLTVMWDGTMVVAANDRGTCYVWRSLCERQTMTEFEPLHKLQAHNSHILKCLLSP- 227
Query: 71 FREPNRYLATASSDHTVKI 89
NRYLATASSD TVKI
Sbjct: 228 --GNNRYLATASSDKTVKI 244
>AT3G18140.2 | Transducin/WD40 repeat-like superfamily protein |
Chr3:6213225-6214567 REVERSE LENGTH=224 | 201606
Length = 224
Score = 94.4 bits (233), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 45/60 (75%), Positives = 50/60 (83%), Gaps = 2/60 (3%)
Query: 12 NTTVRSWTVMWDGSLVVAANNHGTCYIWRLLGGTQ--TNFEPRHKLQAHNGYILKYLLSP 69
+T VRS TVMWDG++VVAANN GTCY+WRLL G Q T FEP HKLQAHNG+ILK LLSP
Sbjct: 162 DTAVRSLTVMWDGTMVVAANNRGTCYVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSP 221