BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0850.1
(115 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34160.1 | Alba DNA/RNA-binding protein | Chr2:14426283-14427... 143 3e-45
AT1G29250.1 | Alba DNA/RNA-binding protein | Chr1:10223461-10224... 132 4e-41
AT3G04620.1 | Alba DNA/RNA-binding protein | Chr3:1255660-125673... 101 3e-28
>AT2G34160.1 | Alba DNA/RNA-binding protein | Chr2:14426283-14427220
FORWARD LENGTH=130 | 201606
Length = 130
Score = 143 bits (361), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 96/130 (73%), Gaps = 17/130 (13%)
Query: 1 MEKITEGLNNVTSLMTKTRTK--FKFPTPKRPLFFHVNLAKRFMQQCGDVKLSTL----- 53
ME+IT+G+NN+ +L T ++ K + K+PLFF+VNLAKR+MQQ DV+LS L
Sbjct: 1 MEEITDGVNNM-NLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIA 59
Query: 54 ---------KNNGFAVEKKIITSTVDIKDESRGRPVQKAKVEILLGKSDKFDELMAAEAE 104
KNNGFAVEKKI+TSTVDIKD++RGRPVQKAK+EI L KS+KFDELMAA E
Sbjct: 60 TVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANE 119
Query: 105 EREVAEAQEQ 114
E+E AEAQ Q
Sbjct: 120 EKEDAEAQVQ 129
>AT1G29250.1 | Alba DNA/RNA-binding protein | Chr1:10223461-10224592
REVERSE LENGTH=130 | 201606
Length = 130
Score = 132 bits (333), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 85/114 (74%), Gaps = 15/114 (13%)
Query: 1 MEKITEGLNNVT-SLMTKTRTKFKFPTPKRPLFFHVNLAKRFMQQCGDVKLSTL------ 53
ME+ITEG+NN+ ++ T+ + + + K+PLFF+VNLAKR+MQQ DV+LS L
Sbjct: 1 MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60
Query: 54 --------KNNGFAVEKKIITSTVDIKDESRGRPVQKAKVEILLGKSDKFDELM 99
KNNGFAVEKKI+TSTVDIKD+SRGRPVQKAK+EI L KS+KFDELM
Sbjct: 61 VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELM 114
>AT3G04620.1 | Alba DNA/RNA-binding protein | Chr3:1255660-1256739
REVERSE LENGTH=164 | 201606
Length = 164
Score = 101 bits (251), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 14/98 (14%)
Query: 16 TKTRTKFKFPTPKRPLFFHVNLAKRFMQQCGDVKLSTL--------------KNNGFAVE 61
T + + + K+PLFF+VNLAKR++QQ +V+LS L KNNG A E
Sbjct: 34 THKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLATE 93
Query: 62 KKIITSTVDIKDESRGRPVQKAKVEILLGKSDKFDELM 99
KK++TSTV +KDE++G+ VQKAK+EI+LGKSDKFD L+
Sbjct: 94 KKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLV 131