BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0880.1
(525 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 193 1e-54
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 100 6e-23
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 99 8e-22
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 91 8e-20
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 90 3e-19
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 193 bits (491), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 155/557 (27%), Positives = 258/557 (46%), Gaps = 57/557 (10%)
Query: 1 MQCFALPKGISNSIESIQRTFWW---GKSKTFHTINWNAICKPRKYGGLGLRLPHLDNQA 57
M CF LPK + I S+ FWW ++K H W+ + + GG+G + N A
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 58 FLHKLNWRIISNPKAIWVQVLKGKYFHKSQKPKPP-KNHYSWPWKSISKYYDQSESLIFW 116
L K WR++S P+++ +V K +YFHKS P + S+ WKSI +
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 117 NINKGDQINIWTDYWIPNHP----------PPIINDRGCNYDRVSQLI-TNGR-WNLTDI 164
+ G+ I IW W+ + P PP + +VS LI +GR W I
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187
Query: 165 NMYFTNEICRAILSINLNPNDE---DKAIWTLTKSGNFSLKSMYNFL------RTNTIYN 215
M F E+ R ++ L P D W T SG++++KS Y L R++
Sbjct: 188 EMLFP-EVERKLIG-ELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEV 245
Query: 216 TNEQMDWFF--IWNMNTIPRIKLFLWKCCTNSLPVKSRIG-KFIGNNYSCVNCND-EETI 271
+ ++ + IW T P+I+ FLWKC +NSLPV + + + +C+ C +ET+
Sbjct: 246 SEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETV 305
Query: 272 DHVMLHCPFAKATWFHYQVR-------TDHISTTIQWII-------QWKSLDEETINLYA 317
+H++ C FA+ TW + D I + W+ QW E+ L
Sbjct: 306 NHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQW----EKASQLVP 361
Query: 318 KILWFLWKARCENCFTTTKQTPMQMIERINKTTTT-PLRT--EKCTTTKGQDQTVIQTWR 374
+LW LWK R E F + +++ R +RT E C T +++ WR
Sbjct: 362 WLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWR 421
Query: 375 PPSTPYIKINVDASFVNLHEQAGIGYIMRDAEANFIMAVADSV-RGQNAEECESLAVLHG 433
PP ++K N DA++ +E+ GIG+++R+ + A ++ + ++ E E A+
Sbjct: 422 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWA 481
Query: 434 LLSARQMQLSYVHLESDNKAIIQALNGEEGCIQWQS-HGIIRQIKDIKDNFSGIIFSHVS 492
+LS + Q +YV ESD++ +I+ LN +E W S I+ ++ + F+ + F +
Sbjct: 482 VLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDLQRLLSQFTEVKFVFIP 538
Query: 493 RNSNSYADALAKRGRAF 509
R N+ A+ +A+ +F
Sbjct: 539 REGNTLAERVARESLSF 555
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 99.8 bits (247), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 137/292 (46%), Gaps = 26/292 (8%)
Query: 231 IPRIKLFLWKCCTNSLPVKSR-IGKFIGNNYSCVNCNDEETIDHVMLHCPFAKATWFHYQ 289
+P+IKLFLWK +LPV ++ + + I + + C C ET H++ HC FA W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 290 VRTDHISTTIQWIIQWKSLDEETI----------NLYAKILWFLWKARCENCFTTTKQTP 339
++ HI I++ +L ++TI L+ I W +WKAR + F + +
Sbjct: 61 LQLGHIPIGTP-ILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIF---QNSH 116
Query: 340 MQMIERINKTTTTPLRTEKCTTTKGQDQTVIQTWRPPSTPYIKIN----VDASFVNLHEQ 395
+IE + K L + + + + T RP ST + + VDA++
Sbjct: 117 FSVIETVTKAVQDALAWQ--SAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSL 174
Query: 396 AGIGYIMR---DAEANFIMAVADSVRGQNAEECESLAVLHGLLSARQMQLSYVHLESDNK 452
AG G++ + +E A R + E+ A+ +L A Q++ S + + SD+K
Sbjct: 175 AGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSK 234
Query: 453 AIIQALNGEEGCIQWQSHGIIRQIKDIKDNFSGIIFSHVSRNSNSYADALAK 504
+I+ ALN + G++ +I+ I++ F I F + R NS ADA AK
Sbjct: 235 SIVDALNSNVSLN--EIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 185/431 (42%), Gaps = 56/431 (12%)
Query: 118 INKGDQINIWTDYWIPNHPP-PIINDRGCNYDRVSQLITNGR----WNLTDINMYFTNE- 171
I G I I D + +HPP P+ + ++ L W+ + I+ +
Sbjct: 42 IGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSD 101
Query: 172 ---ICRAILSINLNPNDEDKAIWTLTKSGNFSLKSMYNFLRTNTIYNT------NEQMDW 222
I R L+ + P DK IW +G ++++S Y L + N + +D
Sbjct: 102 HGFIHRIYLAKSKKP---DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDL 158
Query: 223 -FFIWNMNTIPRIKLFLWKCCTNSLPVKSRI-GKFIGNNYSCVNCNDE-ETIDHVMLHCP 279
IWN+ +P++K FLW+ + +L R+ + + + SC C+ E E+I+H + CP
Sbjct: 159 KTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCP 218
Query: 280 FAKATW-------FHYQVRTDHISTTIQWIIQWKSLDEETINLYAKIL-----WFLWKAR 327
FA W Q+ ++ I I+ + + + T++ + K+L W +WKAR
Sbjct: 219 FATMAWRLSDSSLIRNQLMSNDFEENISNILNF--VQDTTMSDFHKLLPVWLIWRIWKAR 276
Query: 328 CENCFTTTKQTPMQMIERINKTT-----TTPLRTEKCTTTKGQDQTVIQTWRPPSTPYIK 382
F +++P + + T T + + T+ + I+ WR P Y+K
Sbjct: 277 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIE-WRNPPATYVK 335
Query: 383 INVDASFVNLHEQAGIGYIMRDAEANFI----MAVADSVRGQNAEECESLAVLHGLLSAR 438
N DA F +A G+I+R+ I M +A + N E E+ A+L L
Sbjct: 336 CNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHT---SNPLEAETKALLAALQQTW 392
Query: 439 QMQLSYVHLESDNKAIIQALNGEEGCIQWQSHGIIRQIKDIK---DNFSGIIFSHVSRNS 495
+ V +E D + +I +NG I + S + ++DI + F+ I F + R
Sbjct: 393 IRGYTQVFMEGDCQTLINLING----ISFHS-SLANHLEDISFWANKFASIQFGFIRRKG 447
Query: 496 NSYADALAKRG 506
N A LAK G
Sbjct: 448 NKLAHVLAKYG 458
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 91.3 bits (225), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 138/305 (45%), Gaps = 31/305 (10%)
Query: 225 IWNMNTIPRIKLFLWKCCTNSLPVKSRIG-KFIGNNYSCVN-CNDEETIDHVMLHCPFAK 282
IW + T P+IK FLWK + +L + + I N+ C C ++ET H+ C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 283 ATWF-----HYQVRTDHISTTIQWIIQWKSL----DEETINLYAKILWFLWKARCENCFT 333
W H ++RT I+ + + S + NL ILW LWK+R + F
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 334 TTKQTPMQMIERIN------KTTTTPLRT--EKCTTTKGQDQTVIQT-WRPPSTPYIKIN 384
+ ++R + T T +++ ++ +++ Q T+ +T W+ P + +IK N
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN 197
Query: 385 VDASFVNLHEQAGIGYIMRDAEANFIMAVADSVRGQNAEECES--LAVLHGLLSARQMQL 442
D +F + A G++MRD E M ++ ++ ES A++ + A
Sbjct: 198 YDGAFNHQTRNAKAGWLMRD-ENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGY 256
Query: 443 SYVHLESDNKAIIQALNGEE---GCIQWQSHGIIRQIKDIKDNFSGIIFSHVSRNSNSYA 499
V E D+K + + +N E+ G W IR+ + + F +F V R +N A
Sbjct: 257 RKVIFEGDSKQVEELMNNEKLNFGRFNW-----IREGRFWQKRFEEAVFKWVPRTNNQPA 311
Query: 500 DALAK 504
D LAK
Sbjct: 312 DILAK 316
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 132/312 (42%), Gaps = 36/312 (11%)
Query: 225 IWNMNTIPRIKLFLWKCCTNSLPVKSRI-GKFIGNNYSCVNCN-DEETIDHVMLHCPFAK 282
IW ++ P+IK FLW+C T +L +R+ + I + C C +EETI H+M +CP+ +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 283 ATWFHYQVRTDHISTTIQW------------IIQW-KSLDEETINLYAK--ILWFLWKAR 327
+ W R+ +I QW +IQ K+ +++ + I+W LWK+R
Sbjct: 97 SVW-----RSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151
Query: 328 CENCFTTTKQTP--------MQMIERINKTTTTPLRTEKCTTTKGQDQTVIQT-WRPPST 378
F Q+P E +N TT T Q + W PP
Sbjct: 152 NVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPE 211
Query: 379 PYIKINVDASFVNLHEQAGIGYIMRDAEANFIMAVADSVRGQNAE-ECESLAVLHGLLSA 437
++K N D+ + G+ +R+ + ++ ++ E+L LH L
Sbjct: 212 GWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVI 271
Query: 438 RQMQLSYVHLESDNKAIIQAL-NGEEGCIQWQSHGIIRQIKDIKDNFSGIIFSHVSRNSN 496
L YV ESD+K+++ + NGE+ + +I I+ V+R N
Sbjct: 272 WAHGLRYVWFESDSKSLVTLINNGEDHSLL---GTLIYDIRHWMLKLPYCSLEFVNRERN 328
Query: 497 SYADALAKRGRA 508
S ADALA A
Sbjct: 329 SAADALASHVHA 340