BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0930.1
(156 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 44 2e-05
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 3 QRIATLQKSFWW---EKSKRICTKAWSYICLPKKLGGLGIRRPHLDNTG---------IL 50
+ I ++ SF W E + + AWS +C PK GGLGIR N G L
Sbjct: 93 KEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTL 152
Query: 51 SKLAWRLKSDHRPF--GHITWEVHTGENINIWKDKW 84
W+ HR G + ++H G N + W D W
Sbjct: 153 GSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 188