BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1050.1
(97 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09700.2 | dsRNA-binding domain-like superfamily protein | Ch... 48 2e-07
AT1G09700.1 | dsRNA-binding domain-like superfamily protein | Ch... 47 3e-07
>AT1G09700.2 | dsRNA-binding domain-like superfamily protein |
Chr1:3137960-3140118 REVERSE LENGTH=279 | 201606
Length = 279
Score = 47.8 bits (112), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 19 LQELNLCKAILNEFAIKMSLPMPTYETKQME--GLLPAFTSSLEFDGKTYTSPVTPVCKS 76
+ E LCK +L E+A KM+ +P Y+ +++E G + FT ++E G YT T ++
Sbjct: 96 VHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAAT---RT 152
Query: 77 KKEAEQLLARTVLQSILGIT 96
KK+AE RT L +I T
Sbjct: 153 KKDAEISAGRTALLAIQSDT 172
>AT1G09700.1 | dsRNA-binding domain-like superfamily protein |
Chr1:3137960-3140118 REVERSE LENGTH=419 | 201606
Length = 419
Score = 47.0 bits (110), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 19 LQELNLCKAILNEFAIKMSLPMPTYETKQME--GLLPAFTSSLEFDGKTYTSPVTPVCKS 76
+ E LCK +L E+A KM+ +P Y+ +++E G + FT ++E G YT T ++
Sbjct: 96 VHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAAT---RT 152
Query: 77 KKEAEQLLARTVLQSILGIT 96
KK+AE RT L +I T
Sbjct: 153 KKDAEISAGRTALLAIQSDT 172