BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1080.1
(103 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 65 2e-13
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 50 1e-08
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 45 2e-06
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 41 6e-05
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 40 7e-05
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 64.7 bits (156), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 1 MPCFAIPKGIRKRIMTLQKLFWW---GKSKGICTKAWKSICLPKDLGGFGIHLADIDNIA 57
M CF +PK + K+I+++ FWW ++KG+ KAW + K GG G + N+A
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 58 MLSKQAWRIKTNPDAAWVKFLKAKYYPNTDN-PGPAKQHHSWIWKNI 103
+L KQ WR+ + P++ K K++Y+ +D P S++WK+I
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSI 114
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
ChrM:90883-91347 REVERSE LENGTH=154 | 201606
Length = 154
Score = 50.1 bits (118), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 1 MPCFAIPKGIRKRIMTLQKLFWWGKSKG---ICTKAWKSICLPK-DLGGFGIHLADIDNI 56
M CF + K + K++ + FWW + I AW+ +C K D GG G N
Sbjct: 8 MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQ 67
Query: 57 AMLSKQAWRIKTNPDAAWVKFLKAKYYPNTD 87
A+L+KQ++RI P + L+++Y+P++
Sbjct: 68 ALLAKQSFRIIHQPHTLLSRLLRSRYFPHSS 98
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 44.7 bits (104), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 1 MPCFAIPKGIRKRIMTLQKLFWWGKSKGICTKA---WKSICLPKDLGGFGIHLADIDNIA 57
M F +P K I ++ F W + KA W +C PKD GG GI N
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 195
Query: 58 MLSKQAWRIKTNPDAAWVKFL------KAKYYPNTDNPGPAKQHHSWIWKNI 103
L K WR+ ++ + WV++L K ++ + N SW+WK I
Sbjct: 196 SLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKI 242
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 40.8 bits (94), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 1 MPCFAIPKGIRKRIMTLQKLFWWGKSKGICTKA---WKSICLPKDLGGFGIHLADIDNIA 57
M F +P K I ++ F W + KA W +C PKD GG GI N
Sbjct: 82 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 141
Query: 58 MLSKQAWRIKTNPDAAWVKFL------KAKYYPNTDNPGPAKQHHSWIWKNI 103
L K WR+ ++ + WV++L K ++ + N SW+WK I
Sbjct: 142 SLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKI 188
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 40.4 bits (93), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 1 MPCFAIPKGIRKRIMTLQKLFWWGKSKGICTKA---WKSICLPKDLGGFGIHLADIDNIA 57
M F +P K I ++ F W + KA W +C PKD GG GI N
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 195
Query: 58 MLSKQAWRIKTNPDAAWVKFL------KAKYYPNTDNPGPAKQHHSWIWKNI 103
L K WR+ ++ + WV++L K ++ + N SW+WK I
Sbjct: 196 SLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKI 242