BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1090.1
(206 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 55 7e-09
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 51 2e-07
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 46 1e-05
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 54.7 bits (130), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 18 NNYKYWRLCMEAYLQGQDLWDLVCGT----DSLIPDDTQENVELRRKWKIKCGKALFALR 73
+NY W++ ++L+ + + GT D P L + W+ ++ L
Sbjct: 40 DNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSP--------LYQPWEQCNAMVMYWLM 91
Query: 74 TSISKELIDHVRDVDSPKQVWETLQRLFTQKNTTRLQFLENELAALTQGGTSISEYFLKI 133
S++ +L++ V ++ ++WE L+R+F ++ L LA L QGG S+ EYF K+
Sbjct: 92 NSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKL 151
Query: 134 KNVRAEISDLDVEEPISEAR 153
V E+S+ PI E +
Sbjct: 152 SKVWMELSEY---APIPECK 168
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 19 NYKYWRLCMEAYLQGQDLWDLVCGTDSLIPDDTQENVELRRKWKIKCGKALFALRTSISK 78
NY WR E + + G+ + P ++WK + G + +I+
Sbjct: 32 NYDVWRELFETLCLSFGVLGHIDGSSTPTP-------MTEKRWKERDGLVKMWIYGTITD 84
Query: 79 ELIDHVRDVD-SPKQVWETLQRLFTQKNTTRLQFLENELAALTQGGTSISEYFLKIKNVR 137
L+D + V + + +W +L+ LF R ENEL T S+ EY K+K+
Sbjct: 85 SLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKS-- 142
Query: 138 AEISDL--DVEEPISEARLRRYLVRGLRTEFMPFISSIQGWVTQPSIIELENLLSNQEA 194
+SDL +V+ PIS+ L +L+ GL ++ ++ I+ PS E ++L +E+
Sbjct: 143 --LSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLMEES 199
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 19 NYKYWRLCMEAYLQGQDLWDLVCGTDSLIPDDTQENVELRRKWKIKCGKALFALRTSIS- 77
NY WR + D+ + GT L+P + + W+ + G +L +++
Sbjct: 30 NYDAWRELFLTHCLSFDVMGHIDGT--LLPTNAND-----VNWQKRDGIVKLSLYGTLTP 82
Query: 78 KELIDHVRDVDSPKQVWETLQRLFTQKNTTRLQFLENELAALTQGGTSISEYFLKIKNVR 137
K+ + + +W ++ F R L++EL G +++Y+ K+K +
Sbjct: 83 KQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLA 142
Query: 138 AEISDLDVEEPISEARLRRYLVRGLRTEFMPFISSIQGWVTQPSIIELENLLSNQEALMK 197
+ ++DV P+++ L Y++ GL +F I+ I+ PS + +L +E +K
Sbjct: 143 DSLRNVDV--PVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLK 200
Query: 198 Q-MSNKPRH 205
+ + P H
Sbjct: 201 RAIKPNPTH 209