BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1130.1
(161 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 110 3e-30
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 82 1e-18
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 82 1e-18
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 55 3e-10
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 110 bits (274), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 7/141 (4%)
Query: 4 LLEKFQLTSVKPSSTPIAAKTRLLPNDGVILS---DPTSHRSMNGALQYLTWTRPDVNFD 60
+L + KP STP+ K N V + DP+ RS+ GALQYLT TRPD+++
Sbjct: 65 ILNNAGMLDCKPMSTPLPLKL----NSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120
Query: 61 VSQVFQFMHKPTDVHLMEGKRILRYLNGFISHGIRISKSTTFGIQDYVDADWAGSPFDSR 120
V+ V Q MH+PT KR+LRY+ G I HG+ I K++ +Q + D+DWAG R
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 180
Query: 121 FMGGYIIYLAGNPISWSAKKQ 141
G+ +L N ISWSAK+Q
Sbjct: 181 STTGFCTFLGCNIISWSAKRQ 201
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 82.4 bits (202), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%)
Query: 2 LDLLEKFQLTSVKPSSTPIAAKTRLLPNDGVILSDPTSHRSMNGALQYLTWTRPDVNFDV 61
LDLL++ L KPSS P+ + G D ++R + G L YL TR D++F V
Sbjct: 340 LDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAV 399
Query: 62 SQVFQFMHKPTDVHLMEGKRILRYLNGFISHGIRISKSTTFGIQDYVDADWAGSPFDSRF 121
+++ QF P H +IL Y+ G + G+ S +Q + DA + R
Sbjct: 400 NKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRS 459
Query: 122 MGGYIIYLAGNPISWSAKKQQ 142
GY ++L + ISW +KKQQ
Sbjct: 460 TNGYCMFLGTSLISWKSKKQQ 480
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 82.4 bits (202), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%)
Query: 2 LDLLEKFQLTSVKPSSTPIAAKTRLLPNDGVILSDPTSHRSMNGALQYLTWTRPDVNFDV 61
LDLL++ L KPSS P+ + G D ++R + G L YL TR D++F V
Sbjct: 340 LDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAV 399
Query: 62 SQVFQFMHKPTDVHLMEGKRILRYLNGFISHGIRISKSTTFGIQDYVDADWAGSPFDSRF 121
+++ QF P H +IL Y+ G + G+ S +Q + DA + R
Sbjct: 400 NKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRS 459
Query: 122 MGGYIIYLAGNPISWSAKKQQ 142
GY ++L + ISW +KKQQ
Sbjct: 460 TNGYCMFLGTSLISWKSKKQQ 480
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 55.1 bits (131), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 49 YLTWTRPDVNFDVSQVFQFMHKPTDVHLMEGKRILRYLNGFISHGIRISKSTTFGIQDYV 108
YLT TRPD+ F V+++ QF + ++L Y+ G + G+ S ++ ++ +
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 109 DADWAGSPFDSRFMGGYIIYLAGNPISWSAKKQQKFLA--LAQKQSIELL 156
D+DWA P R + G+ + P+ + ++ L+ L Q+Q+IE L
Sbjct: 62 DSDWASCPDTRRSVTGFCSLV---PLWFLGALRKSILSPGLLQRQNIEAL 108