BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1150.1
(737 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 105 3e-25
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 60 4e-09
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 56 5e-08
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 105 bits (262), Expect = 3e-25, Method: Composition-based stats.
Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 12/212 (5%)
Query: 20 PFDVHHSDSPTTILITPLLTG-DNYSSWSRGMSKALRAKGKLGFVDGSIDKPTDPNELEQ 78
P D+HH P+ I L DNY +W LR K GF+DG++ KP + L Q
Sbjct: 21 PPDIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQ 77
Query: 79 -WGRCNDLVSSWLINSVDPPLRSSILYDETASDIWKNLFDRFHQTNAPKIFQLKRAISCL 137
W +CN +V WL+NS+ L S++Y ETA +W++L F KI+QL+R ++ L
Sbjct: 78 PWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATL 137
Query: 138 KQENLDVSTYFTHLKALQDELNSLVITEPCICGH-----GRSLVERTNQDRAMEFLQG-- 190
+Q V YF L + EL+ C CG + E +++ EFL G
Sbjct: 138 RQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLK 197
Query: 191 LNDRFSSIRSQILLIEPFPSILRIHSLINQEE 222
LN F ++ ++I+ +P PS+ +++ E
Sbjct: 198 LNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 20/194 (10%)
Query: 32 ILITPLLTGDNYSSWSRGMSKALRAKGKLGFVDGSIDKPTDPNELEQWGRCNDLVSSWLI 91
I +T L NY W + G LG +DGS PT P ++W + LV W+
Sbjct: 22 IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS-STPT-PMTEKRWKERDGLVKMWIY 79
Query: 92 NSV-DPPLRSSILYDETASDIWKNLFDRFHQTNAPKIFQLKRAISCLKQENLDVSTYFTH 150
++ D L + I TA D+W +L + F + Q + + ++L V Y
Sbjct: 80 GTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQK 139
Query: 151 LKALQDELNSLVITEPCICGHGRSLVERTNQDRA--MEFLQGLNDRFSSIRSQILLIEPF 208
LK+L D L + V+ DR M L GL +++ I + I PF
Sbjct: 140 LKSLSDLLTN---------------VDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPF 184
Query: 209 PSILRIHSLINQEE 222
PS S++ EE
Sbjct: 185 PSFTEARSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 16/182 (8%)
Query: 42 NYSSWSRGMSKALRAKGKLGFVDGSIDKPTDPNELEQWGRCNDLVSSWLINSVDPP-LRS 100
NY +W + +G +DG++ PT+ N++ W + + +V L ++ P +
Sbjct: 30 NYDAWRELFLTHCLSFDVMGHIDGTL-LPTNANDV-NWQKRDGIVKLSLYGTLTPKQFQG 87
Query: 101 SILYDETASDIWKNLFDRFHQTNAPKIFQLKRAISCLKQENLDVSTYFTHLKALQDELNS 160
S + T+ DIW + ++F + +L + ++ V+ Y+ +K L D L +
Sbjct: 88 SFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRN 147
Query: 161 LVITEPCICGHGRSLVERTNQDRAMEFLQGLNDRFSSIRSQILLIEPFPSILRIHSLINQ 220
+ V T+++ M L GLN +F +I + I +PFPS +++ +
Sbjct: 148 VD-------------VPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQE 194
Query: 221 EE 222
EE
Sbjct: 195 EE 196