BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1210.1
(529 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 145 3e-37
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 100 3e-22
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 90 2e-19
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 78 4e-15
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 75 8e-15
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 145 bits (366), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 143/556 (25%), Positives = 240/556 (43%), Gaps = 72/556 (12%)
Query: 7 ICLFFLPNGISNSIEVLQRAICWGKTRSIHTINWSA---ICLPKKLGGLGFRFPYLDNQV 63
+ F LP + I + W + ++W A + K GG+GF+ N
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 64 FLSKLIWRLLKDPGSPWAEILKAKYFTKEHKPKAA-KNHHSWLWNSLYKQVDKVTKLTFW 122
L K +WR+L P S A++ K++YF K A + S++W S++ + + +
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 123 DINKDTNISIWHDYWIPNHP----------PPISNINNSTLTVVSQLI--RNNTWNMTIL 170
+ +I IW W+ + P PP + S++ VS LI W ++
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187
Query: 171 SQCFNSDICNSILSINLQA-QMEDVPRWSLTKSGKFSIKSMYYYL--------------R 215
F I + ++ D W T SG +++KS Y+ L
Sbjct: 188 EMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSE 247
Query: 216 TEHHPIEQKEWVFIWNMHIQPKIKLFLWKCCTNSLPVREKIV-KYVGNIFNCAFCQE-YE 273
+PI QK IW PKI+ FLWKC +NSLPV + +++ C C E
Sbjct: 248 PSLNPIYQK----IWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKE 303
Query: 274 TMNHILLHCNLARRIWFHFNIL-------SINITNLLDWIISWKDLD---EQISSLFAHT 323
T+NH+L C AR W +I + +I L W+ + + + E+ S L
Sbjct: 304 TVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWL 363
Query: 324 LWQIWKARCDKCFS----NTQIVPMKIIDQI-------KCSTFASNPQNINRKIDRTILW 372
LW++WK R + F N Q V + D + + + + PQ +NR W
Sbjct: 364 LWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQ-VNR--SSCGRW 420
Query: 373 SPPKPPYIKINVDASFLTEQELVGIGCTMHDDKANFIVAMACNVRGQNAEEGECWAIIKA 432
PP ++K N DA++ + E GIG + ++K A R + A ++A
Sbjct: 421 RPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGA---RALPKLKSVLEAELEA 477
Query: 433 LQWAM----KKSISYLHIESDNSNMVQLLNNETSDISWQTSK-IIDTVHQLEANFFKVLY 487
++WA+ + +Y+ ESD+ ++++LNN D W + K I + +L + F +V +
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIEILNN---DEIWPSLKPTIQDLQRLLSQFTEVKF 534
Query: 488 THIHREGNHKADQLAK 503
I REGN A+++A+
Sbjct: 535 VFIPREGNTLAERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 115/475 (24%), Positives = 198/475 (41%), Gaps = 54/475 (11%)
Query: 84 LKAKYFTKEHKPKA-AKNHHSWLWNSLYKQVDKVTKLTFWDINKDTNISIWHDYWIPNHP 142
+KA+YF A + S+ W SL + + K T I NI I D + +HP
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 143 PPISNINNS--TLTVVSQLIRNNT---WNMTILSQCFNSDICNSILSINL-QAQMEDVPR 196
P N + +T+ + R + W+ + +SQ + I I L +++ D
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 197 WSLTKSGKFSIKSMYYYLRTE-----------HHPIEQKEWVFIWNMHIQPKIKLFLWKC 245
W+ +G+++++S Y+ L + H I+ K IWN+ I PK+K FLW+
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLK--TRIWNLPIMPKLKHFLWRA 178
Query: 246 CTNSLPVREKIVKYVGNIF-NCAFC-QEYETMNHILLHCNLARRIW-----------FHF 292
+ +L E++ I +C C +E E++NH L C A W
Sbjct: 179 LSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMS 238
Query: 293 NILSINITNLLDWIISWKDLDEQISSLFAHTLWQIWKARCDKCFSNTQIVPMKIIDQIKC 352
N NI+N+L+++ + + L +W+IWKAR + F+ + P K + K
Sbjct: 239 NDFEENISNILNFVQD-TTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKA 297
Query: 353 ST---------FASNPQNINRKIDRTILWSPPKPPYIKINVDASFLTEQELVGIGCTMHD 403
T P + + I W P Y+K N DA F ++ G + +
Sbjct: 298 ETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRN 357
Query: 404 DKANFIVAMACNV-RGQNAEEGECWAIIKALQWAMKKSISYLHIESDNSNMVQLLNNETS 462
I + + N E E A++ ALQ + + + +E D ++ L+N
Sbjct: 358 HYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING--- 414
Query: 463 DISWQTSKI--IDTVHQLEANFFKVLYTHIHREGNHKADQLAK----WSRMHAGS 511
IS+ +S ++ + F + + I R+GN A LAK +S ++GS
Sbjct: 415 -ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGS 468
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 128/294 (43%), Gaps = 23/294 (7%)
Query: 236 PKIKLFLWKCCTNSLPVREKIVK-YVGNIFNCAFCQEYETMNHILLHCNLARRIW----- 289
PKIKLFLWK +LPV ++V+ ++ + ++CA C ET H+L HC+ A ++W
Sbjct: 2 PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPL 61
Query: 290 --FHFNILS--INITNLLDWIISWKDLDEQISSLFAHTLWQIWKARCDKCFSNTQIVPMK 345
H I + + NLL I + ++LF W IWKAR F N+ ++
Sbjct: 62 QLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSVIE 121
Query: 346 IIDQIKCSTFASNPQNINRKIDRTILWSPPKPPYIKIN----VDASFLTEQELVGIG--- 398
+ + A + R P + + VDA++ + L G G
Sbjct: 122 TVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSGWVF 181
Query: 399 -CTMHDDKANFIVAMACNVRGQNAEEGECWAIIKALQWAMKKSISYLHIESDNSNMVQLL 457
T H +K + C R + E WAI A+ A++ S L + SD+ ++V L
Sbjct: 182 QATSHSEKEITTFSAGCR-RFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDAL 240
Query: 458 NNETSDISW-QTSKIIDTVHQLEANFFKVLYTHIHREGNHKADQLAKWSRMHAG 510
N S++S + ++ + + F + + I R N AD AK S +G
Sbjct: 241 N---SNVSLNEIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAKLSLCISG 291
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 139/328 (42%), Gaps = 47/328 (14%)
Query: 229 IWNMHIQPKIKLFLWKCCTNSLPVREKIVKYVGNIFNCAFCQ----EYETMNHILLHCNL 284
IW +H+ PKIK FLW+C T +L ++ NI CQ E ET++HI+ +C
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSR--NIDADPICQRCCIEEETIHHIMFNCPY 94
Query: 285 ARRIWFHFNILSINITNLLDWIISWKD-LDEQISSLFAHT------------LWQIWKAR 331
+ +W NI+ I N S++D L+ I T +W++WK+R
Sbjct: 95 TQSVWRSANII---IGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151
Query: 332 -----CDKCFSNTQIVPMKIIDQIK-----------CSTFASNPQNINRKIDRTILWSPP 375
KC S I D + A+NP +R+ + W+PP
Sbjct: 152 NVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRR--DSSQWNPP 209
Query: 376 KPPYIKINVDASFLTEQELVGIGCTMHDDKANFIVAMACNVRGQNAE-EGECWAIIKALQ 434
++K N D+ + G T+ + + ++ ++ E + ALQ
Sbjct: 210 PEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQ 269
Query: 435 WAMKKSISYLHIESDNSNMVQLLNNETSDISWQTSKIIDTVH-QLEANFFKVLYTHIHRE 493
+ Y+ ESD+ ++V L+NN D S + I D H L+ + + + ++RE
Sbjct: 270 VIWAHGLRYVWFESDSKSLVTLINN-GEDHSLLGTLIYDIRHWMLKLPYCSLEF--VNRE 326
Query: 494 GNHKADQLAKWSRMHAGSWVWLSLSDLP 521
N AD LA S +HA ++ S + P
Sbjct: 327 RNSAADALA--SHVHARDPLFQSYTTPP 352
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 324 LWQIWKARCDKCFSNTQI-----VPMKIIDQIK--CSTFASNPQNINRKID--RTILWSP 374
+W+IWK+ D F++T+ V M + D + +T + QN NR D R WSP
Sbjct: 48 MWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTKWSP 107
Query: 375 PKPPYIKINVDASFLTEQELVGIGCTMHDDKANFIVAMACNVRGQ-NAEEGECWAIIKAL 433
P +K N DAS + G+G + + + I +G+ EE EC +I
Sbjct: 108 PGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI--- 164
Query: 434 QWAMKKSISYLH----IESDNSNMVQLLNNETSDISWQTSKIIDTVHQLEANFFKVLYTH 489
WA++ S + H E DN + +++N ++S+ Q +DT+ +F + ++
Sbjct: 165 -WAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQ--HFLDTIQSWIPSFESIEFSF 221
Query: 490 IHREGNHKADQLAK 503
HRE N AD LAK
Sbjct: 222 KHREQNGCADFLAK 235