BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000130.1_g1210.1
         (529 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143...   145   3e-37
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292...   100   3e-22
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326...    90   2e-19
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735...    78   4e-15
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like...    75   8e-15

>AT4G29090.1 | Ribonuclease H-like superfamily protein |
           Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
          Length = 575

 Score =  145 bits (366), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 143/556 (25%), Positives = 240/556 (43%), Gaps = 72/556 (12%)

Query: 7   ICLFFLPNGISNSIEVLQRAICWGKTRSIHTINWSA---ICLPKKLGGLGFRFPYLDNQV 63
           +  F LP  +   I  +     W   +    ++W A   +   K  GG+GF+     N  
Sbjct: 8   MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67

Query: 64  FLSKLIWRLLKDPGSPWAEILKAKYFTKEHKPKAA-KNHHSWLWNSLYKQVDKVTKLTFW 122
            L K +WR+L  P S  A++ K++YF K     A   +  S++W S++   + + +    
Sbjct: 68  LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127

Query: 123 DINKDTNISIWHDYWIPNHP----------PPISNINNSTLTVVSQLI--RNNTWNMTIL 170
            +    +I IW   W+ + P          PP    + S++  VS LI      W   ++
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187

Query: 171 SQCFNSDICNSILSINLQA-QMEDVPRWSLTKSGKFSIKSMYYYL--------------R 215
              F       I  +     ++ D   W  T SG +++KS Y+ L               
Sbjct: 188 EMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSE 247

Query: 216 TEHHPIEQKEWVFIWNMHIQPKIKLFLWKCCTNSLPVREKIV-KYVGNIFNCAFCQE-YE 273
              +PI QK    IW     PKI+ FLWKC +NSLPV   +  +++     C  C    E
Sbjct: 248 PSLNPIYQK----IWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKE 303

Query: 274 TMNHILLHCNLARRIWFHFNIL-------SINITNLLDWIISWKDLD---EQISSLFAHT 323
           T+NH+L  C  AR  W   +I        + +I   L W+ +  + +   E+ S L    
Sbjct: 304 TVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWL 363

Query: 324 LWQIWKARCDKCFS----NTQIVPMKIIDQI-------KCSTFASNPQNINRKIDRTILW 372
           LW++WK R +  F     N Q V  +  D +       +  +  + PQ +NR       W
Sbjct: 364 LWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQ-VNR--SSCGRW 420

Query: 373 SPPKPPYIKINVDASFLTEQELVGIGCTMHDDKANFIVAMACNVRGQNAEEGECWAIIKA 432
            PP   ++K N DA++  + E  GIG  + ++K       A   R     +    A ++A
Sbjct: 421 RPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGA---RALPKLKSVLEAELEA 477

Query: 433 LQWAM----KKSISYLHIESDNSNMVQLLNNETSDISWQTSK-IIDTVHQLEANFFKVLY 487
           ++WA+    +   +Y+  ESD+  ++++LNN   D  W + K  I  + +L + F +V +
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIEILNN---DEIWPSLKPTIQDLQRLLSQFTEVKF 534

Query: 488 THIHREGNHKADQLAK 503
             I REGN  A+++A+
Sbjct: 535 VFIPREGNTLAERVAR 550


>AT3G09510.1 | Ribonuclease H-like superfamily protein |
           Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
          Length = 484

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 198/475 (41%), Gaps = 54/475 (11%)

Query: 84  LKAKYFTKEHKPKA-AKNHHSWLWNSLYKQVDKVTKLTFWDINKDTNISIWHDYWIPNHP 142
           +KA+YF       A  +   S+ W SL   +  + K T   I    NI I  D  + +HP
Sbjct: 1   MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60

Query: 143 PPISNINNS--TLTVVSQLIRNNT---WNMTILSQCFNSDICNSILSINL-QAQMEDVPR 196
           P   N   +   +T+ +   R  +   W+ + +SQ  +      I  I L +++  D   
Sbjct: 61  PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120

Query: 197 WSLTKSGKFSIKSMYYYLRTE-----------HHPIEQKEWVFIWNMHIQPKIKLFLWKC 245
           W+   +G+++++S Y+ L  +           H  I+ K    IWN+ I PK+K FLW+ 
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLK--TRIWNLPIMPKLKHFLWRA 178

Query: 246 CTNSLPVREKIVKYVGNIF-NCAFC-QEYETMNHILLHCNLARRIW-----------FHF 292
            + +L   E++      I  +C  C +E E++NH L  C  A   W              
Sbjct: 179 LSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMS 238

Query: 293 NILSINITNLLDWIISWKDLDEQISSLFAHTLWQIWKARCDKCFSNTQIVPMKIIDQIKC 352
           N    NI+N+L+++     + +    L    +W+IWKAR +  F+  +  P K +   K 
Sbjct: 239 NDFEENISNILNFVQD-TTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKA 297

Query: 353 ST---------FASNPQNINRKIDRTILWSPPKPPYIKINVDASFLTEQELVGIGCTMHD 403
            T             P    +  +  I W  P   Y+K N DA F  ++     G  + +
Sbjct: 298 ETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRN 357

Query: 404 DKANFIVAMACNV-RGQNAEEGECWAIIKALQWAMKKSISYLHIESDNSNMVQLLNNETS 462
                I   +  +    N  E E  A++ ALQ    +  + + +E D   ++ L+N    
Sbjct: 358 HYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING--- 414

Query: 463 DISWQTSKI--IDTVHQLEANFFKVLYTHIHREGNHKADQLAK----WSRMHAGS 511
            IS+ +S    ++ +      F  + +  I R+GN  A  LAK    +S  ++GS
Sbjct: 415 -ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGS 468


>AT1G10000.1 | Ribonuclease H-like superfamily protein |
           Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
          Length = 303

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 128/294 (43%), Gaps = 23/294 (7%)

Query: 236 PKIKLFLWKCCTNSLPVREKIVK-YVGNIFNCAFCQEYETMNHILLHCNLARRIW----- 289
           PKIKLFLWK    +LPV  ++V+ ++ + ++CA C   ET  H+L HC+ A ++W     
Sbjct: 2   PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPL 61

Query: 290 --FHFNILS--INITNLLDWIISWKDLDEQISSLFAHTLWQIWKARCDKCFSNTQIVPMK 345
              H  I +  +   NLL   I    +    ++LF    W IWKAR    F N+    ++
Sbjct: 62  QLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSVIE 121

Query: 346 IIDQIKCSTFASNPQNINRKIDRTILWSPPKPPYIKIN----VDASFLTEQELVGIG--- 398
            + +      A     +     R     P     +  +    VDA++  +  L G G   
Sbjct: 122 TVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSGWVF 181

Query: 399 -CTMHDDKANFIVAMACNVRGQNAEEGECWAIIKALQWAMKKSISYLHIESDNSNMVQLL 457
             T H +K     +  C  R  +    E WAI  A+  A++   S L + SD+ ++V  L
Sbjct: 182 QATSHSEKEITTFSAGCR-RFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDAL 240

Query: 458 NNETSDISW-QTSKIIDTVHQLEANFFKVLYTHIHREGNHKADQLAKWSRMHAG 510
           N   S++S  +   ++  +  +   F  + +  I R  N  AD  AK S   +G
Sbjct: 241 N---SNVSLNEIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAKLSLCISG 291


>AT2G02650.1 | Ribonuclease H-like superfamily protein |
           Chr2:735411-736546 FORWARD LENGTH=365 | 201606
          Length = 365

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 139/328 (42%), Gaps = 47/328 (14%)

Query: 229 IWNMHIQPKIKLFLWKCCTNSLPVREKIVKYVGNIFNCAFCQ----EYETMNHILLHCNL 284
           IW +H+ PKIK FLW+C T +L    ++     NI     CQ    E ET++HI+ +C  
Sbjct: 37  IWKLHVAPKIKHFLWRCVTGALATNTRLRSR--NIDADPICQRCCIEEETIHHIMFNCPY 94

Query: 285 ARRIWFHFNILSINITNLLDWIISWKD-LDEQISSLFAHT------------LWQIWKAR 331
            + +W   NI+   I N      S++D L+  I      T            +W++WK+R
Sbjct: 95  TQSVWRSANII---IGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151

Query: 332 -----CDKCFSNTQIVPMKIIDQIK-----------CSTFASNPQNINRKIDRTILWSPP 375
                  KC S        I D  +               A+NP   +R+   +  W+PP
Sbjct: 152 NVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRR--DSSQWNPP 209

Query: 376 KPPYIKINVDASFLTEQELVGIGCTMHDDKANFIVAMACNVRGQNAE-EGECWAIIKALQ 434
              ++K N D+ +         G T+ +   + ++     ++        E    + ALQ
Sbjct: 210 PEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQ 269

Query: 435 WAMKKSISYLHIESDNSNMVQLLNNETSDISWQTSKIIDTVH-QLEANFFKVLYTHIHRE 493
                 + Y+  ESD+ ++V L+NN   D S   + I D  H  L+  +  + +  ++RE
Sbjct: 270 VIWAHGLRYVWFESDSKSLVTLINN-GEDHSLLGTLIYDIRHWMLKLPYCSLEF--VNRE 326

Query: 494 GNHKADQLAKWSRMHAGSWVWLSLSDLP 521
            N  AD LA  S +HA   ++ S +  P
Sbjct: 327 RNSAADALA--SHVHARDPLFQSYTTPP 352


>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
           superfamily protein | Chr5:25967824-25968615 FORWARD
           LENGTH=263 | 201606
          Length = 263

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 20/194 (10%)

Query: 324 LWQIWKARCDKCFSNTQI-----VPMKIIDQIK--CSTFASNPQNINRKID--RTILWSP 374
           +W+IWK+  D  F++T+      V M + D  +   +T  +  QN NR  D  R   WSP
Sbjct: 48  MWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTKWSP 107

Query: 375 PKPPYIKINVDASFLTEQELVGIGCTMHDDKANFIVAMACNVRGQ-NAEEGECWAIIKAL 433
           P    +K N DAS      + G+G  + + +   I       +G+   EE EC  +I   
Sbjct: 108 PGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI--- 164

Query: 434 QWAMKKSISYLH----IESDNSNMVQLLNNETSDISWQTSKIIDTVHQLEANFFKVLYTH 489
            WA++ S  + H     E DN  + +++N ++S+   Q    +DT+     +F  + ++ 
Sbjct: 165 -WAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQ--HFLDTIQSWIPSFESIEFSF 221

Query: 490 IHREGNHKADQLAK 503
            HRE N  AD LAK
Sbjct: 222 KHREQNGCADFLAK 235


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