BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1220.1
(539 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 92 1e-19
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 85 6e-17
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 60 1e-10
AT1G40390.1 | DNAse I-like superfamily protein | Chr1:15432576-1... 50 3e-06
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 56/82 (68%)
Query: 328 MANRLKIILADLISPFQAAYVPGRQITDNILIIQELVHSFKKIRGSKSYFGLKLDMSKAF 387
M RLK ++ +LI P QA+++PGR TDNI+ +QE VHS ++ +G K + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 388 DRIEWSYLKKIITAMGFSNHWI 409
DRI W YL+ + + GF W+
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWL 82
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 155/365 (42%), Gaps = 56/365 (15%)
Query: 13 LQDIGYSGLPFIWSNKQFKGNLIQERLDRALTNHNWLSTFPHSKLTHFPTLG-SDDNPIL 71
L DI G+ + WSN Q N I +LDRA+ N +W S+FP S + F G SD +P +
Sbjct: 261 LVDIPSRGVHYTWSNHQ-DDNPIIRKLDRAIANGDWFSSFP-SAIAVFELSGVSDHSPCI 318
Query: 72 LTTKPNSSLGRKPFKFIRTWMSHPNCAQFIKTNWTS-LPKQIQTKLNSLT--IRLAK--- 125
+ + +K F++ +HP + W +P + + + SL ++ AK
Sbjct: 319 IILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIP--VGSHMFSLGEHLKAAKKCC 376
Query: 126 --WNKEVFGHPDTNIEKLTNKIQNIQDPSLF--QDTFIQIETLLLQQ--------ESLWK 173
N++ FG+ ++ + +++IQ L D+ ++E + ++ ES ++
Sbjct: 377 KLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYR 436
Query: 174 EKSRIANINLGDRNTKYFHAKAATRNRKNQIHSIKKDDNSWTNDEAGISSIFSAHVLNIS 233
+KSRI + GD NT++FH KN I ++ DD+ + + + A+ ++
Sbjct: 437 QKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLL 496
Query: 234 TSTESTLSSNLLE---------C---FSHQISPLQNDSLISIPMIEEIR----------- 270
S L+ + ++ C + ++S L +D I+ + R
Sbjct: 497 GSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTA 556
Query: 271 ----------KEDIKYMVTHFFNTASLPTHSNHTHIFLIPNTKTPQTPADYRPINLLNTT 320
K+ V FF T L N T I LIP + +RP++
Sbjct: 557 EFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVV 616
Query: 321 YKIIT 325
YKIIT
Sbjct: 617 YKIIT 621
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 60.1 bits (144), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 424 LINGRPGPTFEVSRGVRQGNPLSPFLFAIAMEGLSRMLENNNNTNSFVGFPIPNSSLSIK 483
+ING P SRG+RQG+PLSP+LF + E LS + G + N+S I
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 484 HLLFADD 490
HLLFADD
Sbjct: 73 HLLFADD 79
>AT1G40390.1 | DNAse I-like superfamily protein |
Chr1:15432576-15434674 REVERSE LENGTH=426 | 201606
Length = 426
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 14/181 (7%)
Query: 13 LQDIGYSGLPFIWSNKQFKGNLIQERLDRALTNHNWLSTFPHSKLTHFPTLGSDDNPILL 72
L D+ G+ + WSN Q + N I +LDRA+ N WL+TFP + P SD ++
Sbjct: 162 LVDLPCRGVLYTWSNHQ-QDNPILRKLDRAIVNGCWLATFPTASAIFDPPSDSDHAACMV 220
Query: 73 TTKPNSSLG-RKPFKFIRTWMSHPNCAQFIKTNWTSLPKQIQTKLNSLTIRLAKWNKEV- 130
+ L +K FK+ +HP+ I W Q + + S L + KE
Sbjct: 221 ILNNSPPLSKKKSFKYFSFLSTHPDFISSILAAW-----QKEIAVGSFMFSLGELLKEAK 275
Query: 131 FGHPDTNIEKLTN-KIQNIQDPS--LFQDTFIQIET---LLLQQESLWKEKSRIANINLG 184
N +N + Q + +PS LF+ + + ES +K+KSRI + G
Sbjct: 276 KACRGLNRRGFSNIQAQLMSNPSDFLFRAEHVARKNWNFFAAALESFYKQKSRIKWLKEG 335
Query: 185 D 185
D
Sbjct: 336 D 336