BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1240.1
(1237 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 249 8e-68
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 249 8e-68
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 117 5e-30
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 79 6e-16
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 76 2e-14
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 249 bits (636), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 174/269 (64%), Gaps = 4/269 (1%)
Query: 973 SFYAALSAITEPRGYRMASKSIHWQRAMEEEMEALMKQRTWSLVPPDPSMNIVGSKWFFR 1032
SF ++ EP Y A + + W AM++E+ A+ TW + P+ +G KW ++
Sbjct: 75 SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134
Query: 1033 TKLKPDGTIDRYKARLVAQGFTQKPGLDFDETFSPVVKPTTIRIILSIAVSRGWSILQLD 1092
K DGTI+RYKARLVA+G+TQ+ G+DF ETFSPV K T++++IL+I+ +++ QLD
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194
Query: 1093 VKNAFLHGDLTEEIYMAQPPGYV----DTSHPSYVCRLHKALYGLKQAPRAWYDKFSSYL 1148
+ NAFL+GDL EEIYM PPGY D+ P+ VC L K++YGLKQA R W+ KFS L
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTL 254
Query: 1149 LRIGFRVSKSDTSLFIRTTPVGMIYLLLYVDDIILTGADSSTIDTIISQLSSEFDMKNMG 1208
+ GF S SD + F++ T + +L+YVDDII+ + + +D + SQL S F ++++G
Sbjct: 255 IGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLG 314
Query: 1209 SLHYFLGIEATSNKDGLLLTQSKYALDIL 1237
L YFLG+E + G+ + Q KYALD+L
Sbjct: 315 PLKYFLGLEIARSAAGINICQRKYALDLL 343
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 249 bits (636), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 174/269 (64%), Gaps = 4/269 (1%)
Query: 973 SFYAALSAITEPRGYRMASKSIHWQRAMEEEMEALMKQRTWSLVPPDPSMNIVGSKWFFR 1032
SF ++ EP Y A + + W AM++E+ A+ TW + P+ +G KW ++
Sbjct: 75 SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134
Query: 1033 TKLKPDGTIDRYKARLVAQGFTQKPGLDFDETFSPVVKPTTIRIILSIAVSRGWSILQLD 1092
K DGTI+RYKARLVA+G+TQ+ G+DF ETFSPV K T++++IL+I+ +++ QLD
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194
Query: 1093 VKNAFLHGDLTEEIYMAQPPGYV----DTSHPSYVCRLHKALYGLKQAPRAWYDKFSSYL 1148
+ NAFL+GDL EEIYM PPGY D+ P+ VC L K++YGLKQA R W+ KFS L
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTL 254
Query: 1149 LRIGFRVSKSDTSLFIRTTPVGMIYLLLYVDDIILTGADSSTIDTIISQLSSEFDMKNMG 1208
+ GF S SD + F++ T + +L+YVDDII+ + + +D + SQL S F ++++G
Sbjct: 255 IGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLG 314
Query: 1209 SLHYFLGIEATSNKDGLLLTQSKYALDIL 1237
L YFLG+E + G+ + Q KYALD+L
Sbjct: 315 PLKYFLGLEIARSAAGINICQRKYALDLL 343
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 117 bits (294), Expect = 5e-30, Method: Composition-based stats.
Identities = 54/99 (54%), Positives = 72/99 (72%)
Query: 983 EPRGYRMASKSIHWQRAMEEEMEALMKQRTWSLVPPDPSMNIVGSKWFFRTKLKPDGTID 1042
EP+ A K W +AM+EE++AL + +TW LVPP + NI+G KW F+TKL DGT+D
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 1043 RYKARLVAQGFTQKPGLDFDETFSPVVKPTTIRIILSIA 1081
R KARLVA+GF Q+ G+ F ET+SPVV+ TIR IL++A
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 52/66 (78%)
Query: 1172 IYLLLYVDDIILTGADSSTIDTIISQLSSEFDMKNMGSLHYFLGIEATSNKDGLLLTQSK 1231
+YLLLYVDDI+LTG+ ++ ++ +I QLSS F MK++G +HYFLGI+ ++ GL L+Q+K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 1232 YALDIL 1237
YA IL
Sbjct: 61 YAEQIL 66
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 93/199 (46%), Gaps = 16/199 (8%)
Query: 31 INLKLDSENFLLWRPQILSLLESQRLVHHLDNTVPPPEPTLASPTGSLTVNPLYESWLTT 90
+ L ++ N+ WR L+ S ++ H+D T+ PT + VN W
Sbjct: 22 VMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL--------LPTNANDVN-----WQKR 68
Query: 91 DRLVFSIIYSSLS-KEAMTDIIGLTRAADVWAQLNQTYASPCITRSLQLKEQIQCIKRGN 149
D +V +Y +L+ K+ + + + D+W ++ + + R+L+L +++ G+
Sbjct: 69 DGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGD 128
Query: 150 ASIADYARNYRVLCETLATTGHHISEAEKVYWFLKGLGPDYETLAGSILSKPPLPTFKDI 209
+ADY R + L ++L +++ V + L GL P ++ + I + P P+F D
Sbjct: 129 MRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDA 188
Query: 210 LPMLQAQEGVIKSFRVVPP 228
MLQ +E +K R + P
Sbjct: 189 ATMLQEEEDRLK--RAIKP 205