BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1250.1
(236 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 136 1e-36
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 136 1e-36
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 127 6e-36
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 79 1e-18
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 136 bits (343), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 103/187 (55%), Gaps = 25/187 (13%)
Query: 11 GVAFSDPTLYRKVVGSLQYLTLTRPDLAYAVNVACQFMHAPTVDHFQAVKRILRYVKGTI 70
G F D YR+++G L YL +TR D+++AVN QF AP + H QAV +IL Y+KGT+
Sbjct: 369 GGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTV 428
Query: 71 HMGLQLFADSASNSLHAYSDADWAGFPDTRRSTSG------------------------T 106
GL ++ A L +SDA + DTRRST+G
Sbjct: 429 GQGL-FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSA 487
Query: 107 EAEYRALASTTADLTWIGYILQELGIRLSTPISIYCDNKSAILMTANPVFHGRSKHIALD 166
EAEYRAL+ T ++ W+ +EL + LS P ++CDN +AI + N VFH R+KHI D
Sbjct: 488 EAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESD 547
Query: 167 YNFVREK 173
+ VRE+
Sbjct: 548 CHSVRER 554
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 136 bits (343), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 103/187 (55%), Gaps = 25/187 (13%)
Query: 11 GVAFSDPTLYRKVVGSLQYLTLTRPDLAYAVNVACQFMHAPTVDHFQAVKRILRYVKGTI 70
G F D YR+++G L YL +TR D+++AVN QF AP + H QAV +IL Y+KGT+
Sbjct: 369 GGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTV 428
Query: 71 HMGLQLFADSASNSLHAYSDADWAGFPDTRRSTSG------------------------T 106
GL ++ A L +SDA + DTRRST+G
Sbjct: 429 GQGL-FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSA 487
Query: 107 EAEYRALASTTADLTWIGYILQELGIRLSTPISIYCDNKSAILMTANPVFHGRSKHIALD 166
EAEYRAL+ T ++ W+ +EL + LS P ++CDN +AI + N VFH R+KHI D
Sbjct: 488 EAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESD 547
Query: 167 YNFVREK 173
+ VRE+
Sbjct: 548 CHSVRER 554
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 127 bits (320), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 83/133 (62%), Gaps = 25/133 (18%)
Query: 14 FSDPTLYRKVVGSLQYLTLTRPDLAYAVNVACQFMHAPTVDHFQAVKRILRYVKGTIHMG 73
+ DP+ +R +VG+LQYLTLTRPD++YAVN+ CQ MH PT+ F +KR+LRYVKGTI G
Sbjct: 94 YPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHG 153
Query: 74 LQLFADSASNSLHAYSDADWAGFPDTRRSTSG------------------------TEAE 109
L + +S N + A+ D+DWAG TRRST+G TE E
Sbjct: 154 LYIHKNSKLN-VQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETE 212
Query: 110 YRALASTTADLTW 122
YRALA T A+LTW
Sbjct: 213 YRALALTAAELTW 225
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 79.0 bits (193), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 29 YLTLTRPDLAYAVNVACQFMHAPTVDHFQAVKRILRYVKGTIHMGLQLFADSASNSLHAY 88
YLT+TRPDL +AVN QF A QAV ++L YVKGT+ GL ++ ++ L A+
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGL-FYSATSDLQLKAF 60
Query: 89 SDADWAGFPDTRRSTSG 105
+D+DWA PDTRRS +G
Sbjct: 61 ADSDWASCPDTRRSVTG 77