BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1300.1
(167 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59180.1 | DNA-directed RNA polymerase II | Chr5:23883499-238... 309 e-109
AT4G14660.3 | RNA polymerase Rpb7-like%2C N-terminal domain-cont... 78 2e-18
AT4G14660.2 | RNA polymerase Rpb7-like%2C N-terminal domain-cont... 78 2e-18
AT4G14660.1 | RNA polymerase Rpb7-like%2C N-terminal domain-cont... 78 2e-18
AT3G22900.2 | RNA polymerase Rpb7-like%2C N-terminal domain-cont... 69 6e-15
>AT5G59180.1 | DNA-directed RNA polymerase II |
Chr5:23883499-23884976 FORWARD LENGTH=176 | 201606
Length = 176
Score = 309 bits (792), Expect = e-109, Method: Compositional matrix adjust.
Identities = 149/166 (89%), Positives = 158/166 (95%)
Query: 1 MQLHPRHFGPNLRDKLVAKLMKDVEGTCSGLHGFVVAITGVDSIGKGLIRDGTGFVTFPV 60
MQLHPR FG NL++ LV+KLMKDVEGTCSG HGFVVAITG+D+IGKGLIRDGTGFVTFPV
Sbjct: 11 MQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPV 70
Query: 61 KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTS 120
KYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GD+PNYTTS
Sbjct: 71 KYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTS 130
Query: 121 DGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 166
DGSVKIQKE EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP AA
Sbjct: 131 DGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176
>AT4G14660.3 | RNA polymerase Rpb7-like%2C N-terminal
domain-containing protein | Chr4:8406500-8407036 REVERSE
LENGTH=178 | 201606
Length = 178
Score = 78.2 bits (191), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 79/133 (59%), Gaps = 5/133 (3%)
Query: 33 GFVVAITGVDSIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 92
G+ VA+T +D IG+G IR+ TG V FPV + + F+ FKGEI+ VV V K G F G
Sbjct: 47 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106
Query: 93 PVQ-IFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDAT--EIFCI 149
P++ +++S +P D ++ G+ P + S +IQ E+ VR+ +IG + E +
Sbjct: 107 PIENVYLSYTKMP-DYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQAL 164
Query: 150 GTIKDDFLGVIND 162
+++ D+LG +++
Sbjct: 165 ASLEGDYLGPLSE 177
>AT4G14660.2 | RNA polymerase Rpb7-like%2C N-terminal
domain-containing protein | Chr4:8406500-8407036 REVERSE
LENGTH=178 | 201606
Length = 178
Score = 78.2 bits (191), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 79/133 (59%), Gaps = 5/133 (3%)
Query: 33 GFVVAITGVDSIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 92
G+ VA+T +D IG+G IR+ TG V FPV + + F+ FKGEI+ VV V K G F G
Sbjct: 47 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106
Query: 93 PVQ-IFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDAT--EIFCI 149
P++ +++S +P D ++ G+ P + S +IQ E+ VR+ +IG + E +
Sbjct: 107 PIENVYLSYTKMP-DYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQAL 164
Query: 150 GTIKDDFLGVIND 162
+++ D+LG +++
Sbjct: 165 ASLEGDYLGPLSE 177
>AT4G14660.1 | RNA polymerase Rpb7-like%2C N-terminal
domain-containing protein | Chr4:8406500-8407036 REVERSE
LENGTH=178 | 201606
Length = 178
Score = 78.2 bits (191), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 79/133 (59%), Gaps = 5/133 (3%)
Query: 33 GFVVAITGVDSIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 92
G+ VA+T +D IG+G IR+ TG V FPV + + F+ FKGEI+ VV V K G F G
Sbjct: 47 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106
Query: 93 PVQ-IFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDAT--EIFCI 149
P++ +++S +P D ++ G+ P + S +IQ E+ VR+ +IG + E +
Sbjct: 107 PIENVYLSYTKMP-DYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQAL 164
Query: 150 GTIKDDFLGVIND 162
+++ D+LG +++
Sbjct: 165 ASLEGDYLGPLSE 177
>AT3G22900.2 | RNA polymerase Rpb7-like%2C N-terminal
domain-containing protein | Chr3:8115645-8116169 FORWARD
LENGTH=174 | 201606
Length = 174
Score = 68.9 bits (167), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 33 GFVVAITGVDSIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 92
G+++ T +++IG+G I++ TG + FPV + + F+ FKGEI+ VV V+K G F ++G
Sbjct: 46 GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105
Query: 93 PVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATE--IFCIG 150
P +I +H+ EF G+ P + S +IQ + VR ++ T E +
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 164
Query: 151 TIKDDFLG 158
+I D LG
Sbjct: 165 SIDGDNLG 172