BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1360.1
(193 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 65 3e-12
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 58 4e-10
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 49 7e-07
AT3G26855.1 | RNA-directed DNA polymerase (reverse transcriptase... 48 7e-07
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 49 1e-06
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 65.1 bits (157), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 12/109 (11%)
Query: 76 DSMIWTLTRSCKFTIKSMYFHL----RTGAYNYEVTD------WQFIWKIPMIPRIKLFL 125
DS W T S +T+KS Y+ L + EV++ +Q IWK P+I+ FL
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFL 270
Query: 126 WKCCTNCLPVRDKIG-KYIGNNFKCMFCEN-RETMTHILLHCNFARAIW 172
WKC +N LPV + +++ C+ C + +ET+ H+L C FAR W
Sbjct: 271 WKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTW 319
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 58.2 bits (139), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 118 IPRIKLFLWKCCTNCLPVRDK-IGKYIGNNFKCMFCENRETMTHILLHCNFARAIW 172
+P+IKLFLWK LPV + + ++I + + C C ET TH+L HC+FA +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVW 56
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 110 QFIWKIPMIPRIKLFLWKCCTNCLPVRDKI-GKYIGNNFKCMF-CENRETMTHILLHCNF 167
Q IWK+ + P+IK FLW+C T L ++ + I + C C ET+ HI+ +C +
Sbjct: 35 QAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPY 94
Query: 168 ARAIWLHFNI 177
+++W NI
Sbjct: 95 TQSVWRSANI 104
>AT3G26855.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:9898680-9899350 REVERSE LENGTH=163 | 201606
Length = 163
Score = 47.8 bits (112), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 112 IWKIPMIPRIKLFLWKCCTNCLPVRDK-IGKYIGNNFKCMFCENRETMTHILLHCNFAR 169
IW + + P+IKL +WK N LPV + + + I C C + ET+THIL +C FA+
Sbjct: 9 IWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFETITHILFNCPFAQ 67
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 112 IWKIPMIPRIKLFLWKCCTNCLPVRDKIG-KYIGNNFKCMF-CENRETMTHILLHCNFAR 169
IWK+ P+IK FLWK + L D + ++I N+ +C C+ ET H+ C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 170 AIWL-----HFNIRTDNFT 183
+W H +RT T
Sbjct: 78 QVWRASGIPHQELRTTGIT 96