BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1430.1
(500 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 320 1e-98
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 320 1e-98
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 150 5e-42
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 85 4e-19
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 57 7e-10
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 320 bits (820), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 183/465 (39%), Positives = 266/465 (57%), Gaps = 21/465 (4%)
Query: 1 MQEEMESLHKNKTWEVVLLPEGKSVIGCKWVYKKKEDSSEIKGT--RYKARLVAKGYAQK 58
M +E+ ++ TWE+ LP K IGCKWVYK K +S GT RYKARLVAKGY Q+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS---DGTIERYKARLVAKGYTQQ 158
Query: 59 EGVDYNEIFSPVVKHTSIRVLLSIVAHRDLELEQLDVKTAFLHGVLEEEIYMAQPEGYKV 118
EG+D+ E FSPV K TS++++L+I A + L QLD+ AFL+G L+EEIYM P GY
Sbjct: 159 EGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAA 218
Query: 119 EGKE----NQVCRLRKSLYGLKQFPRQWYKRFDFFMLKHGFPRSDYDCCVYIKKLREGDF 174
+ N VC L+KS+YGLKQ RQW+ +F ++ GF +S D Y K+ F
Sbjct: 219 RQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSD-HTYFLKITATLF 277
Query: 175 IYLLLYVDDMLIASRSMVEINKLKSQLSQEFEMKDMGAAKKILGMEIKRERSSKKLYLNQ 234
+ +L+YVDD++I S + +++LKSQL F+++D+G K LG+EI RS+ + + Q
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAAGINICQ 335
Query: 235 KGYIERVVSRFGMQNAKAVSTPLAPHFRLSDKQSPTTTVEKDHMDRVPYASAVGSLMYAM 294
+ Y ++ G+ K S P+ P S D +D Y +G LMY
Sbjct: 336 RKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG------GDFVDAKAYRRLIGRLMYLQ 389
Query: 295 VCTRPDISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDT-CQVSGYVDS 353
+ TR DIS AV+ +S+F P H +AV +L Y+KGTV GL + Q+ + D+
Sbjct: 390 I-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDA 448
Query: 354 DYAGDLDRRRSTTGYVFRVHGALVSWRSMLQSTVALSTTEAEYMAMAEGVKEALWLWGLL 413
+ D RRST GY + +L+SW+S Q V+ S+ EAEY A++ E +WL
Sbjct: 449 SFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFF 508
Query: 414 DDLGIK-QECVDVWCDSQSAIHLAKNQIHHARIKHIDVRYHFVRD 457
+L + + ++CD+ +AIH+A N + H R KHI+ H VR+
Sbjct: 509 RELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 320 bits (820), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 183/465 (39%), Positives = 266/465 (57%), Gaps = 21/465 (4%)
Query: 1 MQEEMESLHKNKTWEVVLLPEGKSVIGCKWVYKKKEDSSEIKGT--RYKARLVAKGYAQK 58
M +E+ ++ TWE+ LP K IGCKWVYK K +S GT RYKARLVAKGY Q+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS---DGTIERYKARLVAKGYTQQ 158
Query: 59 EGVDYNEIFSPVVKHTSIRVLLSIVAHRDLELEQLDVKTAFLHGVLEEEIYMAQPEGYKV 118
EG+D+ E FSPV K TS++++L+I A + L QLD+ AFL+G L+EEIYM P GY
Sbjct: 159 EGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAA 218
Query: 119 EGKE----NQVCRLRKSLYGLKQFPRQWYKRFDFFMLKHGFPRSDYDCCVYIKKLREGDF 174
+ N VC L+KS+YGLKQ RQW+ +F ++ GF +S D Y K+ F
Sbjct: 219 RQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSD-HTYFLKITATLF 277
Query: 175 IYLLLYVDDMLIASRSMVEINKLKSQLSQEFEMKDMGAAKKILGMEIKRERSSKKLYLNQ 234
+ +L+YVDD++I S + +++LKSQL F+++D+G K LG+EI RS+ + + Q
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAAGINICQ 335
Query: 235 KGYIERVVSRFGMQNAKAVSTPLAPHFRLSDKQSPTTTVEKDHMDRVPYASAVGSLMYAM 294
+ Y ++ G+ K S P+ P S D +D Y +G LMY
Sbjct: 336 RKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG------GDFVDAKAYRRLIGRLMYLQ 389
Query: 295 VCTRPDISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDT-CQVSGYVDS 353
+ TR DIS AV+ +S+F P H +AV +L Y+KGTV GL + Q+ + D+
Sbjct: 390 I-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDA 448
Query: 354 DYAGDLDRRRSTTGYVFRVHGALVSWRSMLQSTVALSTTEAEYMAMAEGVKEALWLWGLL 413
+ D RRST GY + +L+SW+S Q V+ S+ EAEY A++ E +WL
Sbjct: 449 SFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFF 508
Query: 414 DDLGIK-QECVDVWCDSQSAIHLAKNQIHHARIKHIDVRYHFVRD 457
+L + + ++CD+ +AIH+A N + H R KHI+ H VR+
Sbjct: 509 RELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 150 bits (379), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 133/235 (56%), Gaps = 11/235 (4%)
Query: 175 IYLLLYVDDMLIASRSMVEINKLKSQLSQEFEMKDMGAAKKILGMEIKRERSSKKLYLNQ 234
+YLLLYVDD+L+ S +N L QLS F MKD+G LG++IK S L+L+Q
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQ 58
Query: 235 KGYIERVVSRFGMQNAKAVSTPLAPHFRLSDKQSPTTTVEKDHMDRVPYASAVGSLMYAM 294
Y E++++ GM + K +STPL L S +T D D + S VG+L Y +
Sbjct: 59 TKYAEQILNNAGMLDCKPMSTPLP----LKLNSSVSTAKYPDPSD---FRSIVGALQY-L 110
Query: 295 VCTRPDISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDT-CQVSGYVDS 353
TRPDIS AV++V + M P ++ +K VLRY+KGT+ GL ++ V + DS
Sbjct: 111 TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDS 170
Query: 354 DYAGDLDRRRSTTGYVFRVHGALVSWRSMLQSTVALSTTEAEYMAMAEGVKEALW 408
D+AG RRSTTG+ + ++SW + Q TV+ S+TE EY A+A E W
Sbjct: 171 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 85.1 bits (209), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 66/94 (70%), Gaps = 7/94 (7%)
Query: 1 MQEEMESLHKNKTWEVVLLPEGKSVIGCKWVYKKKEDSSEIKGT--RYKARLVAKGYAQK 58
MQEE+++L +NKTW +V P ++++GCKWV+K K S GT R KARLVAKG+ Q+
Sbjct: 44 MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD---GTLDRLKARLVAKGFHQE 100
Query: 59 EGVDYNEIFSPVVKHTSIRVLLSIVAHRDLELEQ 92
EG+ + E +SPVV+ +IR +L++ + LE+ Q
Sbjct: 101 EGIYFVETYSPVVRTATIRTILNVA--QQLEVGQ 132
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 57.0 bits (136), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 291 MYAMVCTRPDISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDT-CQVSG 349
MY + TRPD++ AV+ +S+F + +AV VL Y+KGTV GL + + Q+
Sbjct: 1 MY-LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 59
Query: 350 YVDSDYAGDLDRRRSTTGY 368
+ DSD+A D RRS TG+
Sbjct: 60 FADSDWASCPDTRRSVTGF 78