BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1450.1
(272 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 79 8e-17
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 71 4e-14
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 67 1e-12
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 66 7e-12
AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 61 5e-11
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 79.0 bits (193), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 34/266 (12%)
Query: 1 MNCPNCTNLETIKHALLHCALAKNIWFHFNIISENITSISD-------WIFSWEND-SKL 52
+ CP+ ET+ H L C A+ +W I + +D W+ + E + KL
Sbjct: 13 VRCPDSR--ETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKL 70
Query: 53 CYTSEDIHFATILWILWKVRCDNCFQHKLNDLNKIIK-IIVSFPR-------NNKITGEK 104
+ + +LW LWK R + F+ K D ++++ + F K +G +
Sbjct: 71 GKIGNLVPW--LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQ 128
Query: 105 KQKN-SRKWQPPPAQFIKFNVDASFINVTSNVGISLIAHNTESKFIEAQVKT-SRARNSE 162
++N S +W+ PP Q++K N DA++ GI I N + + R +N
Sbjct: 129 VERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVL 188
Query: 163 ESEAMAILHGLEWA----KEHNLKSIIIESDNINIINQLNKKKNSVHWQSM-IHINKVRE 217
E+E L L WA N K II ESD ++N LN W ++ + +++
Sbjct: 189 EAE----LEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDD---FWPTLQPALEDIQQ 241
Query: 218 IRRNFEKVQFKYTKRALNSHADKLAK 243
+ +FE+V+F++T R N AD++A+
Sbjct: 242 LLHHFEEVKFEFTPRGGNKVADRIAR 267
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 70.9 bits (172), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 20/240 (8%)
Query: 43 IFSWENDSKLCYTSEDIHFATILWILWKVRCDNCFQHKLNDLNKIIKIIVSFPR---NNK 99
IF NDS++ + + F ++W +WK D F H +++ ++ + +N
Sbjct: 27 IFQMHNDSRVDRVTRFMPFW-LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNT 85
Query: 100 ITGEKKQKN-----SR--KWQPPPAQFIKFNVDASFINVTSNVGISLIAHNTESKFIEAQ 152
+T E++ N SR KW PP +K N DAS + G+ I N++ IE
Sbjct: 86 MTNEQQNGNRNADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECG 145
Query: 153 VKTSRAR-NSEESEAMAILHGLEWAKEHNLKSIIIESDNINIINQLNKKKNSVHWQSMIH 211
+ + R +EE+E ++ ++ + K +I E DN I +N K ++ Q
Sbjct: 146 MGKFQGRMTTEEAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQHF-- 203
Query: 212 INKVREIRRNFEKVQFKYTKRALNSHADKLAKWVRKKNRNKKWS---NIPCILMDKYCNN 268
++ ++ +FE ++F + R N AD LAK K+ N +WS + P L Y NN
Sbjct: 204 LDTIQSWIPSFESIEFSFKHREQNGCADFLAKQAIKE--NTQWSLFHSCPYFL-SPYVNN 260
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 45/270 (16%)
Query: 6 CTNLETIKHALLHCALAKNIWFHFNIISENITSISDWIFSWENDSKLCYTS-------ED 58
C ET +H C A+ +W I + + + + E +L +S +
Sbjct: 60 CQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTG---ITMETKMELLLSSCLANRQPQL 116
Query: 59 IHFAT-ILWILWKVRCDNCFQHK-----------------LNDLNKIIKIIVSFPRNNKI 100
+ A ILW LWK R FQ K D N ++ + N ++
Sbjct: 117 FNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSL-----NQQV 171
Query: 101 TGEKKQKNS---RKWQPPPAQFIKFNVDASFINVTSNVGISLIAHNTESKFI-EAQVKTS 156
+ Q+ + KWQ PP+ +IK+N D +F + T N + + ++ Q S
Sbjct: 172 HSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGS 231
Query: 157 RARNSEESEAMAILHGLEWAKEHNLKSIIIESDNINIINQLNKKKNSVHWQSMIHINKVR 216
+S ESE A++ ++ A + +I E D+ + +N +K + N +R
Sbjct: 232 TTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEK-----LNFGRFNWIR 286
Query: 217 EIR---RNFEKVQFKYTKRALNSHADKLAK 243
E R + FE+ FK+ R N AD LAK
Sbjct: 287 EGRFWQKRFEEAVFKWVPRTNNQPADILAK 316
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 113/271 (41%), Gaps = 44/271 (16%)
Query: 1 MNCPNCTNLETIKHALLHCALAKNIWFHFNIISENITSISD-------WIF-------SW 46
+ CP+C ET+ H L C A+ W +I +D W+F W
Sbjct: 296 IRCPSCK--ETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQW 353
Query: 47 ENDSKLCYTSEDIHFATILWILWKVRCDNCFQHKLNDLNKIIKIIVSFPRNNKIT----- 101
E S+L +LW LWK R + F+ + + ++++ +I
Sbjct: 354 EKASQLV--------PWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAES 405
Query: 102 -GEKKQKNSR---KWQPPPAQFIKFNVDASFINVTSNVGISLIAHNTESKFIEAQVKTSR 157
G K Q N +W+PPP Q++K N DA++ GI + N + E + +R
Sbjct: 406 CGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKG---EVKWMGAR 462
Query: 158 ARNSEESEAMAILHGLEWA----KEHNLKSIIIESDNINIINQLNKKKNSVHWQSM-IHI 212
A +S A L + WA +I ESD+ +I LN N W S+ I
Sbjct: 463 ALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILN---NDEIWPSLKPTI 519
Query: 213 NKVREIRRNFEKVQFKYTKRALNSHADKLAK 243
++ + F +V+F + R N+ A+++A+
Sbjct: 520 QDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:9706657-9707298 REVERSE
LENGTH=213 | 201606
Length = 213
Score = 61.2 bits (147), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 79 HKLNDLNKIIKIIVSFPRNNKITGEKKQKNSRKWQPPPAQFIKFNVDASFIN--VTSNVG 136
H+ + N + +I N + G +++ N +W+ P +IK N D SF+N V S G
Sbjct: 25 HEYTEANTVAQI------NTRSRGVREEDNHDRWRRPERGWIKCNFDGSFVNGDVKSKAG 78
Query: 137 ISLIAHNTESKFIEAQVKTSRARNSEESEAMAILHGLEWAKEHNLKSIIIESDNINIINQ 196
++ + S + Q + N+ ESE A++ ++ H K + E DN + +
Sbjct: 79 W-VVRDSNGSYLLAGQAIGRKVDNALESEIQALIISMQHCWSHGYKRVCFEGDNKMLFDL 137
Query: 197 LNKKK--NSVHWQSMIHINKVREIR---RNFEKVQFKYTKRALNSHADKLAK 243
+N K VH N +R+I R FE + F + +R N+ AD LAK
Sbjct: 138 INGSKVYFGVH-------NWIRDIHWWLRKFESIHFNWIRRHHNTPADILAK 182