BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1470.1
(262 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G33710.1 | RNA-directed DNA polymerase (reverse transcriptase... 61 4e-11
AT1G60720.1 | RNA-directed DNA polymerase (reverse transcriptase... 61 1e-10
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 58 2e-09
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 56 5e-09
AT1G43730.1 | RNA-directed DNA polymerase (reverse transcriptase... 53 6e-08
>AT1G33710.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:12219657-12220289 FORWARD LENGTH=210 | 201606
Length = 210
Score = 61.2 bits (147), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 35 VPISAGAEDRKVWKVNSR--GEFNLKDTYEALRPRAPVVFWHHLVWFPNCIPKHCFTTWV 92
+P +G D W V + F+ T+ ALRPR+ VV W VWF PKH F WV
Sbjct: 8 LPTLSGELDVYDWVVEDKLCNGFSSAKTWAALRPRSDVVSWAKTVWFKGATPKHAFHMWV 67
Query: 93 ALHDGLKTRERLHHWGNVSCTTAGLVHIIVDE 124
D L T+ RL WG TT GL + +++
Sbjct: 68 TNLDRLPTKTRLASWGMQLQTTCGLCSLDIED 99
>AT1G60720.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:22357072-22357941 FORWARD LENGTH=289 | 201606
Length = 289
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 55 FNLKDTYEALRPRAPVVFWHHLVWFPNCIPKHCFTTWVALHDGLKTRERLHHWGNVSCTT 114
F+ T++A+RPRAP + W VWF +PKH F W++ D L TR+RL WG++
Sbjct: 109 FSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFD 168
Query: 115 AGLVHI 120
L I
Sbjct: 169 CCLCTI 174
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 1 LNIKVDTFIRD---GHEWQVHGFLHSQLPDVF---NCLPKVP--ISAGAEDRKVWKVN-- 50
+ + +D +RD G W + S+ P + N LP+ + +D +WK +
Sbjct: 47 VGLPIDAVVRDALRGTSWWIASS-RSRNPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLH 105
Query: 51 -SRGEFNLKDTYEALRPRAPVVFWHHLVWFPNCIPKHCFTTWVALHDGLKTRERLHHWG 108
F+ T+ AL P++ V WH VWF N +PKH F WV + L TR+RL +WG
Sbjct: 106 APSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWG 164
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 22 HSQLPDVFNCLPKVPISAGAEDRKVWKVNSRGE----FNLKDTYEALRPRAPVVFWHHLV 77
+SQL + VP + +D +W+ N+ G F+ +DT+E +R +P V W +V
Sbjct: 73 NSQLFLAALTMAPVPHESRGQDSFLWR-NAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVV 131
Query: 78 WFPNCIPKHCFTTWVALHDGLKTRERLHHWG 108
WF IP+ TW++ + L TR+RL WG
Sbjct: 132 WFKEYIPRFSLITWMSFLERLPTRDRLRGWG 162
>AT1G43730.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:16508723-16509784 REVERSE LENGTH=320 | 201606
Length = 320
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 37 ISAGAEDRKVWKVNSRGEFNLKDTYE---ALRPRAPVVFWHHLVWFPNCIPKHCFTTWVA 93
I +D +WK + N+ T + AL P+ +V W+ VWF N +PKH F WV
Sbjct: 112 IDCQHDDSFIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVV 171
Query: 94 LHDGLKTRERLHHWG 108
+ L TR+RL WG
Sbjct: 172 AWNRLHTRDRLRSWG 186