BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1480.1
(384 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 203 5e-60
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 203 5e-60
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 204 9e-59
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 170 4e-48
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 151 5e-40
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 203 bits (516), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 157/262 (59%), Gaps = 2/262 (0%)
Query: 123 VTHLCFTDDLMVFMKGDVDSTIALRRILDMLFICIGLEANNSKSSIFFAGLSVVMKDSIM 182
+THLCF DDL+VF G S + +I GL+ + KS+I+ AG+ K I+
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 183 HILGFQEGELPMRYLGLPLLSTRLSYFDCLPLIQRVQKRVQSWKARCLTFVGRMILINVV 242
H F G LP+RYLGLPLL+ +++ D PL+++++ R+ W AR L+F GR+ LI+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 243 LNSMLIYWRSVFVLPKRAYKDINSLFNRFLWSCVDLGPRKAAVKWATVCLPKNEGGLGIR 302
++S+ +W S F LP K+I+S+ + FLWS +L +KA V W+ VC PK+EGGLGIR
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 303 SLDTLNMAFNMRHIWDVVSGKDTLWVMWVQHNLIKDQLFWLMKTPNDC-SWCWRQILRCR 361
SL N ++ IW ++S +LWV W++ L++ FW + SW W++IL+ R
Sbjct: 188 SLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 362 DKAYNLILHIIGDGSGTLFWVD 383
A + H I +GS T FW D
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 203 bits (516), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 157/262 (59%), Gaps = 2/262 (0%)
Query: 123 VTHLCFTDDLMVFMKGDVDSTIALRRILDMLFICIGLEANNSKSSIFFAGLSVVMKDSIM 182
+THLCF DDL+VF G S + +I GL+ + KS+I+ AG+ K I+
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 183 HILGFQEGELPMRYLGLPLLSTRLSYFDCLPLIQRVQKRVQSWKARCLTFVGRMILINVV 242
H F G LP+RYLGLPLL+ +++ D PL+++++ R+ W AR L+F GR+ LI+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 243 LNSMLIYWRSVFVLPKRAYKDINSLFNRFLWSCVDLGPRKAAVKWATVCLPKNEGGLGIR 302
++S+ +W S F LP K+I+S+ + FLWS +L +KA V W+ VC PK+EGGLGIR
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 303 SLDTLNMAFNMRHIWDVVSGKDTLWVMWVQHNLIKDQLFWLMKTPNDC-SWCWRQILRCR 361
SL N ++ IW ++S +LWV W++ L++ FW + SW W++IL+ R
Sbjct: 188 SLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 362 DKAYNLILHIIGDGSGTLFWVD 383
A + H I +GS T FW D
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 204 bits (520), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 157/262 (59%), Gaps = 2/262 (0%)
Query: 123 VTHLCFTDDLMVFMKGDVDSTIALRRILDMLFICIGLEANNSKSSIFFAGLSVVMKDSIM 182
+THLCF DDL+VF G S + +I GL+ + KS+I+ AG+ K I+
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 183 HILGFQEGELPMRYLGLPLLSTRLSYFDCLPLIQRVQKRVQSWKARCLTFVGRMILINVV 242
H F G LP+RYLGLPLL+ +++ D PL+++++ R+ W AR L+F GR+ LI+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 243 LNSMLIYWRSVFVLPKRAYKDINSLFNRFLWSCVDLGPRKAAVKWATVCLPKNEGGLGIR 302
++S+ +W S F LP K+I+S+ + FLWS +L +KA V W+ VC PK+EGGLGIR
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 303 SLDTLNMAFNMRHIWDVVSGKDTLWVMWVQHNLIKDQLFWLMKTPNDC-SWCWRQILRCR 361
SL N ++ IW ++S +LWV W++ L++ FW + SW W++IL+ R
Sbjct: 188 SLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 362 DKAYNLILHIIGDGSGTLFWVD 383
A + H I +GS T FW D
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 170 bits (430), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 131/215 (60%), Gaps = 2/215 (0%)
Query: 170 FAGLSVVMKDSIMHILGFQEGELPMRYLGLPLLSTRLSYFDCLPLIQRVQKRVQSWKARC 229
AG+ K I+H F G LP+RYLGLPLL+ +++ D PL+++++ R+ W AR
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 230 LTFVGRMILINVVLNSMLIYWRSVFVLPKRAYKDINSLFNRFLWSCVDLGPRKAAVKWAT 289
L+F GR+ LI+ V++S+ +W S F LP K+I+S+ + FLWS +L +KA V W+
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 290 VCLPKNEGGLGIRSLDTLNMAFNMRHIWDVVSGKDTLWVMWVQHNLIKDQLFWLMKTPND 349
VC PK+EGGLGIRSL N ++ IW ++S +LWV W++ L++ FW +
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTT 179
Query: 350 C-SWCWRQILRCRDKAYNLILHIIGDGSGTLFWVD 383
SW W++IL+ R A + H I +GS T FW D
Sbjct: 180 LGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFD 214
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 151 bits (382), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 117/214 (54%), Gaps = 28/214 (13%)
Query: 170 FAGLSVVMKDSIMHILGFQEGELPMRYLGLPLLSTRLSYFDCLPLIQRVQKRVQSWKARC 229
AG+ K I+H F G LP+RYLGLPLL+ +++ D PL+++++ R+ W AR
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 230 LTFVGRMILINVVLNSMLIYWRSVFVLPKRAYKDINSLFNRFLWSCVDLGPRKAAVKWAT 289
L+F GR+ LI+ V++S+ +W S F LP K+I+S+ + FLWS +L +KA V W+
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 290 VCLPKNEGGLGIRSLDTLNMAFNMRHIWDVVSGKDTLWVMWVQHNLIKDQLFWLMKTPND 349
VC PK+EGGLGIRSL N W +SG TL
Sbjct: 121 VCTPKDEGGLGIRSLKEANKG----SFWS-ISGNTTL----------------------- 152
Query: 350 CSWCWRQILRCRDKAYNLILHIIGDGSGTLFWVD 383
SW W++IL+ R A + H I +GS T FW D
Sbjct: 153 GSWMWKKILKHRALASGFVKHDIHNGSNTSFWFD 186